View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5866_low_23 (Length: 447)

Name: NF5866_low_23
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5866_low_23
NF5866_low_23
[»] chr8 (3 HSPs)
chr8 (311-431)||(39750721-39750841)
chr8 (147-227)||(39750925-39751005)
chr8 (10-62)||(39512-39565)
[»] chr5 (1 HSPs)
chr5 (10-77)||(4196595-4196662)
[»] chr1 (3 HSPs)
chr1 (1-77)||(22346000-22346076)
chr1 (10-60)||(8459015-8459065)
chr1 (38-86)||(19499132-19499181)
[»] chr6 (2 HSPs)
chr6 (10-77)||(18610198-18610265)
chr6 (38-86)||(18001218-18001266)
[»] chr4 (3 HSPs)
chr4 (10-68)||(4774579-4774637)
chr4 (38-86)||(11494548-11494596)
chr4 (11-62)||(50278790-50278842)
[»] chr7 (1 HSPs)
chr7 (38-86)||(47060931-47060979)
[»] chr2 (2 HSPs)
chr2 (38-86)||(25184850-25184898)
chr2 (10-58)||(41052681-41052729)


Alignment Details
Target: chr8 (Bit Score: 121; Significance: 8e-62; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 311 - 431
Target Start/End: Complemental strand, 39750841 - 39750721
Alignment:
Q  311 tagaagcttactattagttgtttgttgtgttcatcatcatcagaagaagaccttgtgtttgtgctctgcttcttccatccgtacataatcataatcataa 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39750841 tagaagcttactattagttgtttgttgtgttcatcatcatcagaagaagaccttgtgtttgtgctctgcttcttccatccgtacataatcataatcataa 39750742  T
Q  411 tcataatctagggttccattt 431  Q
    |||||||||||||||||||||    
T  39750741 tcataatctagggttccattt 39750721  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 39751005 - 39750925
Alignment:
Q  147 actaaaatgggaacgcccgggcagcggtctgagtctgaaataatgagcacacgcactcacgaacacacaaaaaccacgtag 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39751005 actaaaatgggaacgcccgggcagcggtctgagtctgaaataatgagcacacgcacttacgaacacacaaaaaccacgtag 39750925  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 39565 - 39512
Alignment:
Q  10 tatgcagaactcactatctgcatattta-ttttcctcggcagctaactgcagcc 62  Q
    ||||||||||||||| |||||||| | | ||||||||||||| |||||||||||    
T  39565 tatgcagaactcactgtctgcataatcagttttcctcggcagttaactgcagcc 39512  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 77
Target Start/End: Complemental strand, 4196662 - 4196595
Alignment:
Q  10 tatgcagaactcactatctgcatatttattttcctcggcagctaactgcagccaattttaaattcctc 77  Q
    |||||||||| |||| |||||||| || ||||||||||||| ||| ||||||| ||||||||||||||    
T  4196662 tatgcagaacccactgtctgcataattgttttcctcggcagttaattgcagccgattttaaattcctc 4196595  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 22346000 - 22346076
Alignment:
Q  1 cattataaatatgcagaactcactatctgcatatttattttcctcggcagctaactgcagccaattttaaattcctc 77  Q
    ||||| || |||||||||| |||| |||||||| || ||||||||||||| |||||||||||  ||| |||||||||    
T  22346000 cattagaattatgcagaacccactgtctgcataattgttttcctcggcagttaactgcagccggtttcaaattcctc 22346076  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 8459065 - 8459015
Alignment:
Q  10 tatgcagaactcactatctgcatatttattttcctcggcagctaactgcag 60  Q
    |||||||||| |||| |||||||| || ||||||||||||| |||||||||    
T  8459065 tatgcagaacccactgtctgcataattgttttcctcggcagttaactgcag 8459015  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 19499132 - 19499181
Alignment:
Q  38 ttttcctcggcagctaactgcagcc-aattttaaattcctcaacagttaa 86  Q
    ||||||||||||| ||||||||||| ||||||||||| |||| |||||||    
T  19499132 ttttcctcggcagttaactgcagccgaattttaaatttctcagcagttaa 19499181  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 18610198 - 18610265
Alignment:
Q  10 tatgcagaactcactatctgcatatttattttcctcggcagctaactgcagccaattttaaattcctc 77  Q
    |||||||||| ||||||||||||| || ||||||||||||| ||| |||||||  ||| |||||||||    
T  18610198 tatgcagaacccactatctgcatagttgttttcctcggcagttaaatgcagccggtttcaaattcctc 18610265  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 18001266 - 18001218
Alignment:
Q  38 ttttcctcggcagctaactgcagccaattttaaattcctcaacagttaa 86  Q
    ||||| ||||||| |||||||||||  |||| |||||||||||||||||    
T  18001266 ttttcttcggcagttaactgcagccggtttttaattcctcaacagttaa 18001218  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 68
Target Start/End: Original strand, 4774579 - 4774637
Alignment:
Q  10 tatgcagaactcactatctgcatatttattttcctcggcagctaactgcagccaatttt 68  Q
    |||||||||  |||| |||||||| || ||||||||||||| ||||| |||||||||||    
T  4774579 tatgcagaaaccactgtctgcataattgttttcctcggcagttaactacagccaatttt 4774637  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 11494596 - 11494548
Alignment:
Q  38 ttttcctcggcagctaactgcagccaattttaaattcctcaacagttaa 86  Q
    ||||||||||||| |||||||||||  |||| |||||||| ||||||||    
T  11494596 ttttcctcggcagttaactgcagccggttttgaattcctcgacagttaa 11494548  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 50278790 - 50278842
Alignment:
Q  11 atgcagaactcactatctgcata-tttattttcctcggcagctaactgcagcc 62  Q
    ||||||| |||||| |||||||| ||| ||||||||||||| |||||||||||    
T  50278790 atgcagagctcactgtctgcataatttgttttcctcggcagttaactgcagcc 50278842  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 47060979 - 47060931
Alignment:
Q  38 ttttcctcggcagctaactgcagccaattttaaattcctcaacagttaa 86  Q
    ||||||||||||| ||||| ||||| ||||| |||||||| ||||||||    
T  47060979 ttttcctcggcagttaactacagccgattttgaattcctcgacagttaa 47060931  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 25184850 - 25184898
Alignment:
Q  38 ttttcctcggcagctaactgcagccaattttaaattcctcaacagttaa 86  Q
    ||||||||||||| |||||||||||  ||| ||||||||| ||||||||    
T  25184850 ttttcctcggcagttaactgcagccggtttcaaattcctcgacagttaa 25184898  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 58
Target Start/End: Complemental strand, 41052729 - 41052681
Alignment:
Q  10 tatgcagaactcactatctgcatatttattttcctcggcagctaactgc 58  Q
    |||||||||| |||| |||||||| |||||||||||||||  |||||||    
T  41052729 tatgcagaacccactgtctgcataattattttcctcggcaattaactgc 41052681  T

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