View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_low_24 (Length: 444)
Name: NF5866_low_24
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 20 - 400
Target Start/End: Complemental strand, 5972445 - 5972066
Alignment:
| Q |
20 |
gaacatgatagcagttgggtccaacaaatcttggacgagacttcgatacgatattagaatttgtgtttgggtgtaacacaagtgcacaaaactaacttgt |
119 |
Q |
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| T |
5972445 |
gaacatgatagcacttgggtccaacaaatcttggacgagacttcgatacgatattagaatttgtgtttgagtgtaacacaagtgcacaaaactaacttgt |
5972346 |
T |
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| Q |
120 |
aaggtgatgatttgcctccatttagaaacatttgtttaggttatctatcatctaatgtgagactcttaacgtaacaagtttttgattcaacaattattag |
219 |
Q |
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| T |
5972345 |
aagatgatgatt-gcctccatttataaacacttgtttagattatctctcatctaatgtgagactcttaacgtaacaagtctttgattcaacaattattag |
5972247 |
T |
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| Q |
220 |
acaaagtgaaattttagtttttagttggttgaaaacaaaacatatgcatttaggttttaatttacatattgatggcttaaccttattttttgtttgagtt |
319 |
Q |
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| T |
5972246 |
acaaagtgaaattttagtttttagttggttgaaaacaaaacatatgcatttagggtttaatttacatattgatggcttaaccttatttcttgtttgagtt |
5972147 |
T |
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| Q |
320 |
ttgtcacatgctttgtgttatctcgattcatgtactatgtttgtagtagttacttttcaatcatctccttgcacagcttat |
400 |
Q |
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| T |
5972146 |
ttgtcacatgctttgtgttatctcgattcatgtgctatgtttgtagtagttacttttcaatcatctccttgcacagcttat |
5972066 |
T |
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