View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_low_26 (Length: 439)
Name: NF5866_low_26
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 417
Target Start/End: Complemental strand, 1502375 - 1501965
Alignment:
| Q |
18 |
catttctcttttatatatgcaatgccaaactggatgtgggcacaactattaactttgtacgaaatagctaaatcagtccttttctttgttattcaataca |
117 |
Q |
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| T |
1502375 |
catttctcttttatatatgcaatgccaaactggatgtgggcacaactattaactttgtacgaaatagctaaatcagtctttttcgttgttattcaataca |
1502276 |
T |
|
| Q |
118 |
aatgcaaatgtagctagaatctagacttggacgagaagtatcaaccataaaaaatcaataatgtactcaagaatcttactttaagtgacaaaatgcttct |
217 |
Q |
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| T |
1502275 |
aatgcaaatgtagctagaatctagacttggacgagaagtatcaaccataaaaaatcaataatgtactcaagaatcttactttaagtgacaaaatgcttct |
1502176 |
T |
|
| Q |
218 |
tc-----------tatgattgctttattggatccaaaggatgtctttattatggccttctccacattttctaaatagagtaaaataaacatacaccgaca |
306 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1502175 |
tctatatatcatatatgattgctttattggatccaaaggatgtctttattatagccttctccacattttctaaatagagtaaaataaacatacaccgaca |
1502076 |
T |
|
| Q |
307 |
gtgtaactaattttttaaaagatagggttaaatatatttttaccaagaaaaataatatcatatatcaaatcatgaactatagagattttgatgtctcgac |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1502075 |
gtgtaactaattttttaaaagatagggttaaatatatttttaccaagaaaaataatatcatatatcaaatcatgaactatagagattttgatgtctcgac |
1501976 |
T |
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| Q |
407 |
cataataatta |
417 |
Q |
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| T |
1501975 |
cataataatta |
1501965 |
T |
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