View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_low_28 (Length: 435)
Name: NF5866_low_28
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 114 - 417
Target Start/End: Complemental strand, 4128951 - 4128648
Alignment:
| Q |
114 |
cgatctagaccgcaataccaaggacttaaaaaaggtctgtgatctcattctggactgcaataccagggttgtttgtgtctaaacaaacataagtgactgc |
213 |
Q |
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| T |
4128951 |
cgatctagaccgcaataccaaggacttaaaaaaggtctgtgatctcattctggactgcaataccagggttgtttgtgtctaaacaaacataagtgactgc |
4128852 |
T |
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| Q |
214 |
agttgatgttgcgtcaaccgcatttgacttcaactattcgcaatattaagaattggcatgttgctgcaactgtaatttaaaaccttgcactatccgtcat |
313 |
Q |
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| T |
4128851 |
agttgatgttgcgtcaaccgcatttgacttcaactatttgcaatattaagaattggcatgttgctgcaactgtaatttaaaaccttgcactatccgtcat |
4128752 |
T |
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| Q |
314 |
acaattatattatagaatgctctagttaatagttacaagatttgatgaatggttattatttctctacaatgtagactattccaaggaagttttggcttga |
413 |
Q |
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| T |
4128751 |
acaattatattatagaatgctctagttaatagttacaagatttgatgaatggttattatttctctacaatgtagactattccaaggaagttttggcttga |
4128652 |
T |
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| Q |
414 |
tgaa |
417 |
Q |
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|||| |
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| T |
4128651 |
tgaa |
4128648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 180 - 414
Target Start/End: Complemental strand, 4137500 - 4137264
Alignment:
| Q |
180 |
ggttgtttgtgtctaaacaaacataagtgactgcagttgatgttgcgtcaaccgcatttgacttcaactattcgcaatattaagaattggcatgttgctg |
279 |
Q |
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| T |
4137500 |
ggttttttatgtctacgcaaacataagtgactgcagttgatgtttcatcaatcgcatttgattacagctatttgcaatattaagaatcggcatgtgactg |
4137401 |
T |
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| Q |
280 |
caactgtaatttaaaaccttgcactatccgtcatacaat--tatattatagaatgctctagttaatagttacaagatttgatgaatggttattatttctc |
377 |
Q |
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| T |
4137400 |
caactacaatttaaaaccttgcgctatccgttatataattatatattataacctgatctagataatagttataagatttgatgaatgattagtgtttatt |
4137301 |
T |
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| Q |
378 |
tacaatgtagactattccaaggaagttttggcttgat |
414 |
Q |
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| T |
4137300 |
tacaatgtagacaattccaaggaagttctggcttgat |
4137264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 312 - 417
Target Start/End: Complemental strand, 4142438 - 4142333
Alignment:
| Q |
312 |
atacaattatattatagaatgctctagttaatagttacaagatttgatgaatggttattatttctctacaatgtagactattccaaggaagttttggctt |
411 |
Q |
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| T |
4142438 |
atacaactatattataacatgatctagataatagttacaagatttgatgaatgattagagtttctctacaatgtagacaattccaaggaagttttggctt |
4142339 |
T |
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| Q |
412 |
gatgaa |
417 |
Q |
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|||||| |
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| T |
4142338 |
gatgaa |
4142333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 4129049 - 4129017
Alignment:
| Q |
16 |
atgacattgataaaggatgggctggtttacagg |
48 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
4129049 |
atgagattgataaaggatgggctggtttacagg |
4129017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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