View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_low_3 (Length: 826)
Name: NF5866_low_3
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 682; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 18 - 757
Target Start/End: Complemental strand, 44995154 - 44994412
Alignment:
| Q |
18 |
aggacacaaacaacactcaagcatttcatcaaacaactcgcgagctcgatcattatcaccaaattcataaaaccctgtaacaacagtacaataagcaaca |
117 |
Q |
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| T |
44995154 |
aggacacaaacaacactcaagcatttcatcaaacaactcgcgagctcgatcattatcaccaaattcataaaaccctgtaacaacagtacaataagcaaca |
44995055 |
T |
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| Q |
118 |
gcatttgaaaaacaacccagcaccggcatattccgaagcagcctcaaagcagcataaggcctacccgttctacaaaaactcttaatccttatagtataag |
217 |
Q |
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| T |
44995054 |
gcatttgaaaaacaacccagcaccggcatattccgaagcagcctcaaagcagcataaggcctacccgttctacaaaaactcttaatccttatagtataag |
44994955 |
T |
|
| Q |
218 |
tatacacatctgattcaacctttttatctttcatcctcatataaaccttatgagcttgattaaaataaccaaactcaacaagaatattcataatagcatt |
317 |
Q |
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| T |
44994954 |
tatacacatctgattcaacctttttatctttcatcctcatataaaccttatgagcttgattaaaataaccaaactcaacaagaatattcataatagcatt |
44994855 |
T |
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| Q |
318 |
ataagaataaacagatgggtcacagttgaataaatccatgcgttcaaatgtatcaacagcttcttgaatttttccttttcttccgtagaatctcatggct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44994854 |
ataagaataaacagatgggtcacagttgaataaatccatgcgttcaaatgtatcaacagcttcttgaatttttccttttcttccgtagaatctcatggct |
44994755 |
T |
|
| Q |
418 |
tcaacgtaaactccttctaacaatgtgttatcgagatttgatctcatttcagagagaagattctccatctcgttgaatttaccatggaagccaagttttt |
517 |
Q |
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| T |
44994754 |
tcaacgtaaactccttctaacaatgtgttatcgagatttgatctcatttcagagagaagattctccatctcgttgaatttaccatggaagccaagttttt |
44994655 |
T |
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| Q |
518 |
gaagcatggatttgtaggtgaagagagtgtgtttgaatccttgttcgttttttgatgagttgaagatttctaatgcttttagtggatctttttgtacttt |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44994654 |
gaagcatggatttgtaggtgaagagagtgtgtttgaatccttgttcgttttttgatgagttgaagatttctaatgcttttagtggatcattttgtacttt |
44994555 |
T |
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| Q |
618 |
cactacagctgcaacatgttttggaagcaacgcacgattcattct---aacataaataactacaacaaggtttcaggttcttgtgcgggtttttgcaatg |
714 |
Q |
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| T |
44994554 |
cactacagctgcaacatgttttggaagcaacgcacgattcattctaagaacataaacaactacaacaaggtttcaggttcttgtgcgggtttttgcaatg |
44994455 |
T |
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| Q |
715 |
tttnnnnnnnnnnnnnggaaattaaaccaaacgaagcgttttg |
757 |
Q |
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||| ||||||||||||||||||||||||||| |
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| T |
44994454 |
tttgaaaaatgaaaaaggaaattaaaccaaacgaagcgttttg |
44994412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 748 - 808
Target Start/End: Complemental strand, 44992807 - 44992747
Alignment:
| Q |
748 |
aagcgttttgtttctagttgtggaatgtaattgccacgtcataaaaaagtaggacccattg |
808 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44992807 |
aagcgttttgtttctagttgtggaatgtgattgccacgtcataaaaaagtaggacccattg |
44992747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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