View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5866_low_32 (Length: 423)

Name: NF5866_low_32
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5866_low_32
NF5866_low_32
[»] chr2 (2 HSPs)
chr2 (17-411)||(37190473-37190879)
chr2 (69-105)||(21936977-21937013)
[»] chr5 (2 HSPs)
chr5 (64-111)||(27356594-27356641)
chr5 (69-101)||(14501827-14501859)
[»] chr3 (1 HSPs)
chr3 (147-188)||(40275789-40275830)
[»] chr6 (3 HSPs)
chr6 (75-110)||(2754068-2754103)
chr6 (69-122)||(7734962-7735015)
chr6 (69-105)||(30901465-30901501)
[»] chr7 (1 HSPs)
chr7 (69-110)||(1419318-1419359)
[»] chr1 (1 HSPs)
chr1 (72-108)||(38711522-38711558)


Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 17 - 411
Target Start/End: Complemental strand, 37190879 - 37190473
Alignment:
Q  17 ctttgtgggtttactagtcctctcgtttctgtgtatatattttttccgtctctagacaaagtggtaaacaccactaaaactcacacacac--tgcaaaat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  37190879 ctttgtgggtttactagtcctctcgtttctgtgtatatattttttccgtctctagacaaagtggtaaacaccactaaaactcacacacacactgcaaaat 37190780  T
Q  115 tttggattgaaatccggatgaaagtgttcatttaacctaacaattttgatattgtcggttgagctaggctttacatacgtctttatatttttctattacc 214  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  37190779 tttggactgaaattcggatgaaagtgttcatttaacctaacaattttgatattgtcggttgagctaggctttacgaacgtctttatatttttctattacc 37190680  T
Q  215 ttcttaaatttagattgaagaacataaaagtcaccgccaagacatatgaaactggaggaacctttctagcgtggtcactgtccatcatctcttttatctt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37190679 ttcttaaatttagattgaagaacataaaagtcaccgccaagacatatgaaactggaggaacctttctagcgtggtcactgtccatcatctcttttatctt 37190580  T
Q  315 tattcttgagcatatctcaactttcttatctcaaaaattcaaa----------caaaattcacggataatattatgcatacatacatgatgtatcattgt 404  Q
    |||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||    
T  37190579 tattcttgagcatatctcaactttcttatctcaaaaattcaaacaaaggaaaacaaaattcacggataatattatgcatacatacatgatgtatcattgt 37190480  T
Q  405 caagaat 411  Q
    |||||||    
T  37190479 caagaat 37190473  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 21936977 - 21937013
Alignment:
Q  69 tagacaaagtggtaaacaccactaaaactcacacaca 105  Q
    |||||||||||||||| || |||||||||||||||||    
T  21936977 tagacaaagtggtaaatacaactaaaactcacacaca 21937013  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 27356641 - 27356594
Alignment:
Q  64 gtctctagacaaagtggtaaacaccactaaaactcacacacactgcaa 111  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||    
T  27356641 gtctatagacaaagtggtaaacaccactgaaactcacacacactgcaa 27356594  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 101
Target Start/End: Complemental strand, 14501859 - 14501827
Alignment:
Q  69 tagacaaagtggtaaacaccactaaaactcaca 101  Q
    |||||||||||||||||||||||||||||||||    
T  14501859 tagacaaagtggtaaacaccactaaaactcaca 14501827  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 40275830 - 40275789
Alignment:
Q  147 taacctaacaattttgatattgtcggttgagctaggctttac 188  Q
    ||||||||||||||||| |||||| |||||||||||||||||    
T  40275830 taacctaacaattttgacattgtcagttgagctaggctttac 40275789  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 75 - 110
Target Start/End: Original strand, 2754068 - 2754103
Alignment:
Q  75 aagtggtaaacaccactaaaactcacacacactgca 110  Q
    ||||||||||||||||| ||||||||||||||||||    
T  2754068 aagtggtaaacaccactgaaactcacacacactgca 2754103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 7735015 - 7734962
Alignment:
Q  69 tagacaaagtggtaaacaccactaaaactcacacacactgcaaaattttggatt 122  Q
    ||||| |||||||||| |||||| ||||||| |||||||  |||||||||||||    
T  7735015 tagacgaagtggtaaagaccactgaaactcatacacactataaaattttggatt 7734962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 30901501 - 30901465
Alignment:
Q  69 tagacaaagtggtaaacaccactaaaactcacacaca 105  Q
    ||||||| ||||||||||||||||||||| |||||||    
T  30901501 tagacaaggtggtaaacaccactaaaacttacacaca 30901465  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 1419359 - 1419318
Alignment:
Q  69 tagacaaagtggtaaacaccactaaaactcacacacactgca 110  Q
    ||||| ||||||||||||||| | ||||||||||||||||||    
T  1419359 tagacgaagtggtaaacaccattgaaactcacacacactgca 1419318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 108
Target Start/End: Complemental strand, 38711558 - 38711522
Alignment:
Q  72 acaaagtggtaaacaccactaaaactcacacacactg 108  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  38711558 acaaagtagtaaacaccactaaaactcacacatactg 38711522  T

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