View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_low_34 (Length: 403)
Name: NF5866_low_34
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 10 - 387
Target Start/End: Complemental strand, 38556026 - 38555649
Alignment:
| Q |
10 |
aagaatatgaagtgcaattaaaaaacaaatatagtatgttttttgctaattaattaagtaatgttatctcaaaataacaataattaagttttgaatggta |
109 |
Q |
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| T |
38556026 |
aagaaaatgaagtgcaattaaaaaacaaatatcgtatgttttttgctaattaattaagtaatgttatctcaaaataataataattaagttttgaatggta |
38555927 |
T |
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| Q |
110 |
taacaaacttgtttaagatatcaatcaataatccaaaattccgtaatggtgtatgaatgtagacatcaaataacagacaataaacatgacgatttcgtcc |
209 |
Q |
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| T |
38555926 |
taacaaacttgtttaagatatcaattaataatccaaaattccgtaatggtgtatgaatgtagacatcaaataacagacaataaacatgacgatttcgtcc |
38555827 |
T |
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| Q |
210 |
tttaaacaaatgacgatgatacatggccgtccaaaagaccaacatacctttacaccgtagaagagataaaattagatgggaggattacgttttctttgta |
309 |
Q |
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| T |
38555826 |
tttaaacaaatgacgatgatacatggccgtccaaaagaccaacatacctttacaccgtagaagagataaaattagatgggaggattacgttttctttgta |
38555727 |
T |
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| Q |
310 |
aacaatagttgcatctttagcttcatatagacaatcaaaattatgatgtttggtcggtatcttatcctaattatatat |
387 |
Q |
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| T |
38555726 |
aacaatagttgcatctttagcttcatatagacaatcaaaattatgatgtttggtcggtatcttatcctaattatatat |
38555649 |
T |
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