View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5866_low_36 (Length: 399)

Name: NF5866_low_36
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5866_low_36
NF5866_low_36
[»] chr3 (10 HSPs)
chr3 (199-335)||(26770352-26770488)
chr3 (16-199)||(26770949-26771134)
chr3 (328-376)||(26769712-26769760)
chr3 (22-170)||(34332806-34332954)
chr3 (22-170)||(40930519-40930667)
chr3 (46-180)||(35214354-35214486)
chr3 (46-180)||(29523724-29523860)
chr3 (46-134)||(11203844-11203932)
chr3 (22-170)||(2364278-2364426)
chr3 (22-170)||(7312777-7312925)
[»] chr2 (5 HSPs)
chr2 (16-199)||(17764922-17765107)
chr2 (46-170)||(41207041-41207165)
chr2 (26-199)||(28252725-28252900)
chr2 (46-173)||(38604362-38604489)
chr2 (22-170)||(4552170-4552318)
[»] chr6 (8 HSPs)
chr6 (16-195)||(15958777-15958958)
chr6 (46-170)||(18651225-18651349)
chr6 (22-128)||(2553638-2553744)
chr6 (77-170)||(24767415-24767508)
chr6 (22-174)||(14372978-14373130)
chr6 (46-180)||(21630086-21630222)
chr6 (46-180)||(20883012-20883148)
chr6 (46-134)||(17606361-17606449)
[»] chr1 (5 HSPs)
chr1 (23-199)||(47623037-47623215)
chr1 (22-170)||(51052481-51052629)
chr1 (22-170)||(11909096-11909244)
chr1 (46-134)||(16917836-16917924)
chr1 (46-134)||(43388392-43388480)
[»] scaffold0472 (1 HSPs)
scaffold0472 (42-170)||(3273-3401)
[»] chr7 (7 HSPs)
chr7 (22-170)||(11277243-11277391)
chr7 (22-170)||(47876984-47877132)
chr7 (46-170)||(235428-235552)
chr7 (22-189)||(17720636-17720805)
chr7 (42-126)||(29967996-29968080)
chr7 (69-134)||(25619507-25619572)
chr7 (22-170)||(4938119-4938267)
[»] chr5 (13 HSPs)
chr5 (46-170)||(42928156-42928280)
chr5 (22-170)||(23238385-23238533)
chr5 (22-170)||(28535666-28535814)
chr5 (23-128)||(8228028-8228133)
chr5 (22-170)||(12825200-12825348)
chr5 (46-180)||(8300161-8300297)
chr5 (22-170)||(30732305-30732453)
chr5 (70-170)||(35983782-35983882)
chr5 (46-180)||(33385353-33385489)
chr5 (46-180)||(18359071-18359207)
chr5 (46-180)||(27767067-27767203)
chr5 (46-134)||(25857451-25857539)
chr5 (94-170)||(31641584-31641660)
[»] chr4 (12 HSPs)
chr4 (25-199)||(11587158-11587334)
chr4 (22-170)||(7403914-7404062)
chr4 (46-134)||(45472736-45472824)
chr4 (46-129)||(55725718-55725801)
chr4 (23-127)||(19755269-19755373)
chr4 (23-127)||(19784433-19784537)
chr4 (46-128)||(15740246-15740328)
chr4 (22-124)||(47685932-47686034)
chr4 (22-139)||(1828562-1828679)
chr4 (104-173)||(19735735-19735804)
chr4 (22-170)||(13270882-13271030)
chr4 (22-170)||(23642582-23642730)
[»] chr8 (10 HSPs)
chr8 (16-114)||(34137010-34137108)
chr8 (22-170)||(13396389-13396537)
chr8 (22-124)||(32266565-32266667)
chr8 (46-180)||(37434157-37434293)
chr8 (46-170)||(2170367-2170491)
chr8 (22-170)||(9922602-9922750)
chr8 (46-173)||(13200148-13200275)
chr8 (22-170)||(7924387-7924535)
chr8 (46-134)||(20824321-20824409)
chr8 (70-170)||(41665360-41665460)
[»] scaffold0034 (1 HSPs)
scaffold0034 (22-170)||(105834-105982)


Alignment Details
Target: chr3 (Bit Score: 133; Significance: 5e-69; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 199 - 335
Target Start/End: Complemental strand, 26770488 - 26770352
Alignment:
Q  199 aaaaagtgaataactttaagataacgtggttcaatgagatccacaaaatacatatgggtggaaatatgctagtgcagtgctaactacgaaaatatgcgag 298  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26770488 aaaaagtgaataactttaagataacatggttcaatgagatccacaaaatacatatgggtggaaatatgctagtgcagtgctaactacgaaaatatgcgag 26770389  T
Q  299 tcttataagttataataactacggaaagatatatgcg 335  Q
    |||||||||||||||||||||||||||||||||||||    
T  26770388 tcttataagttataataactacggaaagatatatgcg 26770352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 26771134 - 26770949
Alignment:
Q  16 atgataccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccata 115  Q
    |||||||||||||||||| ||||| ||||||||||||||||||| |||||| ||||||||  ||| ||||||| |||||||||||| ||||||||||| |    
T  26771134 atgataccacggtttgccaaatttgctttcgtaggtaaacgatccctcaaaagccgccaagtaagaatagagactttaagaggagcctgtttatgccaca 26771035  T
Q  116 ttaactccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcat--acaccacgaactgaatacccgccaccctga 199  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  26771034 ttaactccatatttggatgtaactaaggatgttcctgtaatgttagcatgtcatacacaccacgaactgaatacccgccaccctga 26770949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 328 - 376
Target Start/End: Complemental strand, 26769760 - 26769712
Alignment:
Q  328 tatatgcgtggtttcgccaagatggaagtgcagcgagtagaattgatag 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26769760 tatatgcgtggtttcgccaagatggaagtgcagcgagtagaattgatag 26769712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 170
Target Start/End: Complemental strand, 34332954 - 34332806
Alignment:
Q  22 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 121  Q
    |||||||||||| ||||   ||| |||||||| |||||||||| | |  ||||| |||| ||||| | ||| |||||| | ||||||||||| |||||||    
T  34332954 ccacggtttgccaaattattttttgtaggtaatcgatctctcagaagttgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaact 34332855  T
Q  122 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 170  Q
    |||||||  |||||||||  || || |||||| |||| |||||||||||    
T  34332854 ccatattatgatgtaactggggctgctcctgtgatgtcagcatgtcata 34332806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 170
Target Start/End: Complemental strand, 40930667 - 40930519
Alignment:
Q  22 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 121  Q
    |||||||||||| ||||   ||| |||||||| | ||| |||||| | |||||| |||| ||||| | ||| |||||| | |||||||| || | |||||    
T  40930667 ccacggtttgccaaattattttttgtaggtaaccaatccctcaaaagtcgccaagcaaggatagatactttgagaggaacctgtttatgtcaaactaact 40930568  T
Q  122 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 170  Q
    |||| ||| |||| |||| ||| || |||||| |||| |||||||||||    
T  40930567 ccatgttttgatgcaactgaggttgctcctgtgatgtcagcatgtcata 40930519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 180
Target Start/End: Complemental strand, 35214486 - 35214354
Alignment:
Q  46 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 145  Q
    ||||| |||||||| |||||   |||||||||||| ||||| | ||| | |||| | ||||||||||| ||||||||||||||| |||| |  | ||| |    
T  35214486 gtaggcaaacgatccctcaacatccgccaaacaaggatagaaacttttaaaggaacctgtttatgccagattaactccatattttgatgaacatgaggtt 35214387  T
Q  146 gttcctgtaatgttagcatgtcatacaccacgaac 180  Q
    ||||| || |||||| |||||  ||||||||||||    
T  35214386 gttcccgtgatgttaacatgt--tacaccacgaac 35214354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 180
Target Start/End: Complemental strand, 29523860 - 29523724
Alignment:
Q  46 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 145  Q
    |||||||||||||| |||||  | |||||| |||| ||||| | ||| | |||| | ||||||||||| ||||||||||||||| |||| |  | ||| |    
T  29523860 gtaggtaaacgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacatgaggtt 29523761  T
Q  146 gttcctgtaatgttagcatgtc--atacaccacgaac 180  Q
    |||||||| |||| | || |||  |||||||||||||    
T  29523760 gttcctgtgatgtcaacaagtcatatacaccacgaac 29523724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 11203844 - 11203932
Alignment:
Q  46 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatg 134  Q
    |||||||||||||| |||||  | |||||| |||| ||||| | ||| | |||| | ||||||||||| ||||||||||||||| ||||    
T  11203844 gtaggtaaacgatccctcaacagtcgccaagcaagtatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatg 11203932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 2364278 - 2364426
Alignment:
Q  22 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 121  Q
    ||||| |||||| |||| | ||| |||||||| ||||| ||||   | |||||| |||| ||||| | ||| |||||  | ||||||||||| ||||| |    
T  2364278 ccacgatttgccaaattaagttttgtaggtaaccgatccctcagtagtcgccaagcaaggatagatactttgagagggacctgtttatgccaaattaagt 2364377  T
Q  122 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 170  Q
    |||||||  | |||||||  || || |||||| |||| |||||||||||    
T  2364378 ccatattatggtgtaactggggctgctcctgtgatgtcagcatgtcata 2364426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 7312777 - 7312925
Alignment:
Q  22 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 121  Q
    ||||| |||||| |||| | ||| |||||||| ||||| ||||   | |||||| |||| ||||| | ||| |||||  | ||||||||||| ||||| |    
T  7312777 ccacgatttgccaaattaagttttgtaggtaaccgatccctcattagtcgccaagcaaggatagatactttgagaggtacctgtttatgccaaattaagt 7312876  T
Q  122 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 170  Q
    |||||||  | |||||||  || || |||||| |||| |||||||||||    
T  7312877 ccatattatggtgtaactggggctgctcctgtgatgtcagcatgtcata 7312925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 9e-43; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 17765107 - 17764922
Alignment:
Q  16 atgataccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccata 115  Q
    |||||||||||||||||| ||||| |||||||||||||| |||| |||||  |||||||| |||| ||||||| |||||||||||| |||||||||||||    
T  17765107 atgataccacggtttgccaaatttgctttcgtaggtaaatgatccctcaatagccgccaagcaagaatagagactttaagaggagcctgtttatgccata 17765008  T
Q  116 ttaactccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcatacaccac---gaactgaatacccgccaccctga 199  Q
    ||||||||||||||  || |||| |||||||||| ||| |||| | |||||||||||| ||   ||||||||||| |||||||||||    
T  17765007 ttaactccatatttgaatataaccaaggatgttcatgtgatgtcaacatgtcatacac-actgtgaactgaatactcgccaccctga 17764922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 46 - 170
Target Start/End: Original strand, 41207041 - 41207165
Alignment:
Q  46 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 145  Q
    |||||||| ||||| |||| | |||||||| |||| ||||||| ||| |||||| | ||||||||||| ||||||||||||||| ||||||||| |||||    
T  41207041 gtaggtaaccgatccctcagaagccgccaagcaaggatagagactttgagaggaacctgtttatgccaaattaactccatatttggatgtaactgaggat 41207140  T
Q  146 gttcctgtaatgttagcatgtcata 170  Q
    |||||||  |||| |||||||||||    
T  41207141 gttcctgcgatgtcagcatgtcata 41207165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 199
Target Start/End: Original strand, 28252725 - 28252900
Alignment:
Q  26 ggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccat 125  Q
    |||||||| ||||| | ||||||||||| ||||| |||||| |||||||| |||| ||||| | ||| |||||  | ||||||||||| ||||| |||||    
T  28252725 ggtttgccaaatttcccttcgtaggtaagcgatccctcaaaagccgccaagcaagaatagatacttttagaggtacctgtttatgccaaattaattccat 28252824  T
Q  126 atttagatgtaactaaggatgttcctgtaatgttagcatgtcatacacc--acgaactgaatacccgccaccctga 199  Q
    |  |  |||||||| ||| ||||||||| |||| |||||||||||||||  ||| |||||||| ||||| ||||||    
T  28252825 agatgaatgtaactgaggctgttcctgtgatgtcagcatgtcatacaccctacggactgaataaccgcctccctga 28252900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 173
Target Start/End: Complemental strand, 38604489 - 38604362
Alignment:
Q  46 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 145  Q
    ||||||||||||||||| ||  || ||||  |||| || || | ||| |||||  ||||||||||||| ||||||||||||||| |||| || | ||| |    
T  38604489 gtaggtaaacgatctcttaacagcagccatgcaaggattgaaacttttagaggtacttgtttatgccagattaactccatattttgatgaaaattaggtt 38604390  T
Q  146 gttcctgtaatgttagcatgtcatacac 173  Q
    |||||||| |||| | ||||||||||||    
T  38604389 gttcctgtgatgtcaacatgtcatacac 38604362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 4552170 - 4552318
Alignment:
Q  22 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 121  Q
    ||||| |||||| |||| | ||| |||||||| ||||| |||| | | |||||| |||| ||||| | |||||||||| | | ||||||||| ||||| |    
T  4552170 ccacgatttgccaaattaagttttgtaggtaaccgatccctcagaagtcgccaagcaaggatagatactttaagaggaacctatttatgccaaattaagt 4552269  T
Q  122 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 170  Q
    |||||||  | |||||||  || || |||||| |||| |||||||||||    
T  4552270 ccatattatggtgtaactggggctgctcctgtgatgtcagcatgtcata 4552318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 15958958 - 15958777
Alignment:
Q  16 atgataccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccata 115  Q
    ||||||||| |||||||| ||||| |||||||||||||| |||| |||||| |||||||| |||| ||||||| |||||||||| | |||||||||||||    
T  15958958 atgataccatggtttgccaaatttgctttcgtaggtaaatgatccctcaaaagccgccaagcaagaatagagactttaagaggaacctgtttatgccata 15958859  T
Q  116 ttaactccatatttagatgtaactaaggatgttcctgtaatgttagcatgtc--atacaccacgaactgaatacccgccacc 195  Q
    |||||| ||||||| ||||||||| | | ||||||||| |||| ||||||||  | ||||| |||||||||||||| |||||    
T  15958858 ttaacttcatatttggatgtaactgaagttgttcctgtgatgtcagcatgtcagacacaccgcgaactgaatacccaccacc 15958777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 170
Target Start/End: Complemental strand, 18651349 - 18651225
Alignment:
Q  46 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 145  Q
    |||||||| ||||| |||| | | |||||| |||| ||||||| ||| |||||| | ||||||||||| ||||||||||||||| ||| |||||  || |    
T  18651349 gtaggtaaccgatccctcagaagtcgccaagcaaggatagagactttgagaggaacctgtttatgccaaattaactccatattttgatctaactggggct 18651250  T
Q  146 gttcctgtaatgttagcatgtcata 170  Q
    | |||||| |||| |||||||||||    
T  18651249 gctcctgtgatgtcagcatgtcata 18651225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 2553638 - 2553744
Alignment:
Q  22 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 121  Q
    |||||||||||| ||||   ||| |||||||| |||||| ||||| | |||||| |||| ||||| | ||| |||||| | ||||||||||| |||||||    
T  2553638 ccacggtttgccaaattattttttgtaggtaaccgatctttcaaaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaact 2553737  T
Q  122 ccatatt 128  Q
    |||||||    
T  2553738 ccatatt 2553744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 170
Target Start/End: Complemental strand, 24767508 - 24767415
Alignment:
Q  77 caagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 170  Q
    |||| ||||||| ||| | |||| | ||||||||| | ||||||||||||||| |||||||||| || || |||||| |||| |||||||||||    
T  24767508 caaggatagagactttgataggaacctgtttatgcaaaattaactccatattttgatgtaactagggctgctcctgtgatgtcagcatgtcata 24767415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 174
Target Start/End: Complemental strand, 14373130 - 14372978
Alignment:
Q  22 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 121  Q
    |||||||||||| ||||| ||||||||||||| |  |  |||||| || ||||| |||| ||||| | ||| |||||  | ||||||||||| ||||| |    
T  14373130 ccacggtttgccaaatttcctttcgtaggtaagccgttcctcaaaagctgccaagcaagaatagatacttttagaggtacctgtttatgccaaattaaat 14373031  T
Q  122 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcatacacc 174  Q
    |||||     |||||||| ||| ||||||||  |||| |||||||||||||||    
T  14373030 ccatagaagaatgtaactgaggctgttcctgggatgtcagcatgtcatacacc 14372978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 180
Target Start/End: Complemental strand, 21630222 - 21630086
Alignment:
Q  46 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 145  Q
    |||||||||||||| |||||  | ||||||||||| ||||| | ||| | |||| | || |||||||| ||||||||||||||| |||| |  | ||| |    
T  21630222 gtaggtaaacgatccctcaatagtcgccaaacaaggatagaaacttttaaaggaacctggttatgccaaattaactccatattttgatgaacatgaggtt 21630123  T
Q  146 gttcctgtaatgttagcatgtc--atacaccacgaac 180  Q
    |||||||| |||| | || |||  |||||||||||||    
T  21630122 gttcctgtgatgtcaacaagtcatatacaccacgaac 21630086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 180
Target Start/End: Complemental strand, 20883148 - 20883012
Alignment:
Q  46 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 145  Q
    |||||||||| ||| |||||  |||||||| |||| ||||| | ||| | |||| | | ||||||||| ||||||||||||||| |||| |  |  || |    
T  20883148 gtaggtaaacaatccctcaacagccgccaagcaaggatagaaacttttaaaggaacctatttatgccagattaactccatattttgatgaacatgtggtt 20883049  T
Q  146 gttcctgtaatgttagcatgtc--atacaccacgaac 180  Q
    |||||||| |||| | ||||||  |||||||||||||    
T  20883048 gttcctgtgatgtcaacatgtcatatacaccacgaac 20883012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 17606449 - 17606361
Alignment:
Q  46 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatg 134  Q
    ||||||||| |||| |||||  | |||||| |||| ||||| | ||| | |||| | ||||||||||| ||||||||||||||| ||||    
T  17606449 gtaggtaaatgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatg 17606361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 199
Target Start/End: Complemental strand, 47623215 - 47623037
Alignment:
Q  23 cacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactc 122  Q
    ||||||||||| ||||| | ||||||||||| || || |||||| |||||||| |||| ||||| | ||| |||||  | ||||||||||| ||||| ||    
T  47623215 cacggtttgccaaatttcccttcgtaggtaagcggtccctcaaaagccgccaagcaagaatagatactttgagaggtacctgtttatgccaaattaattc 47623116  T
Q  123 catatttagatgtaactaaggatgttcctgtaatgttagcatgtcataca--ccacgaactgaatacccgccaccctga 199  Q
    ||||| |  |||||||| ||| ||||||||| |||| |||||||||||||  ||| | |||||||||||||| ||||||    
T  47623115 catatatgaatgtaactgaggttgttcctgtgatgtcagcatgtcatacaccccatggactgaatacccgcctccctga 47623037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 51052481 - 51052629
Alignment:
Q  22 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 121  Q
    ||||| |||||| |||| | ||| |||||||| ||||| |||| | | |||||| |||| ||||| | ||| |||||| | ||||||||||| ||||| |    
T  51052481 ccacgatttgccaaattaagttttgtaggtaaccgatccctcagaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaagt 51052580  T
Q  122 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 170  Q
    |||||||  | |||||||  || || |||||| |||| |||||||||||    
T  51052581 ccatattatggtgtaactggggctgctcctgtgatgtcagcatgtcata 51052629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 170
Target Start/End: Complemental strand, 11909244 - 11909096
Alignment:
Q  22 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 121  Q
    ||||| |||||| |||| | ||| |||||||| ||||| |||| | | |||||| |||  ||||| | ||| |||||| | ||||||||||| ||||| |    
T  11909244 ccacgatttgccaaattaagttttgtaggtaaccgatccctcagaagtcgccaagcaatgatagatactttgagaggaacctgtttatgccaaattaagt 11909145  T
Q  122 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 170  Q
    |||||||  | |||||||  || || |||||| |||| |||||||||||    
T  11909144 ccatattatggtgtaactggggctgctcctgtgatgtcagcatgtcata 11909096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 16917924 - 16917836
Alignment:
Q  46 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatg 134  Q
    |||||||| ||||| |||||  | |||||| |||| ||||| | ||| | |||| | ||||||||||| ||||||||||||||| ||||    
T  16917924 gtaggtaagcgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatg 16917836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 43388392 - 43388480
Alignment:
Q  46 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatg 134  Q
    |||||||||||||| |||||    |||||| |||| ||||| | ||| | |||| | ||||||||||| ||||||||||||||| ||||    
T  43388392 gtaggtaaacgatccctcaacaatcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatg 43388480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 42 - 170
Target Start/End: Original strand, 3273 - 3401
Alignment:
Q  42 tttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaa 141  Q
    |||||||||||| |||||||||||| | | |||| |||| ||||| | |||||||||| | ||||||||||| ||||||||||||||  | ||||||||     
T  3273 tttcgtaggtaaccgatctctcaaaagtctccaagcaaggatagaaactttaagaggaacctgtttatgccaaattaactccatattatggtgtaactag 3372  T
Q  142 ggatgttcctgtaatgttagcatgtcata 170  Q
    || || |||||| |||| ||||| |||||    
T  3373 ggttgctcctgtgatgtcagcatatcata 3401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 22 - 170
Target Start/End: Complemental strand, 11277391 - 11277243
Alignment:
Q  22 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 121  Q
    |||||||||||| ||||   |||||||||||| |||||||||||| | |||||| |||| ||||| | ||| |||||| | ||||||||||| |||||||    
T  11277391 ccacggtttgccaaattatttttcgtaggtaaccgatctctcaaaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaact 11277292  T
Q  122 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 170  Q
    |||||||  | |||||||  || || |||||| |||| ||||| |||||    
T  11277291 ccatattatggtgtaactggggttgctcctgtgatgtcagcatatcata 11277243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 47876984 - 47877132
Alignment:
Q  22 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 121  Q
    |||||||||||| ||||   ||| ||||||||  ||||||||| | | |||||| |||| ||||| | ||| |||||| | ||||||||||| |||||||    
T  47876984 ccacggtttgccaaattattttttgtaggtaactgatctctcagaagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaact 47877083  T
Q  122 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 170  Q
    || ||||| |||||||||  || || |||||| |||| |||||||||||    
T  47877084 ccctattttgatgtaactggggctgctcctgtgatgtcagcatgtcata 47877132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 170
Target Start/End: Complemental strand, 235552 - 235428
Alignment:
Q  46 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 145  Q
    |||||||| ||||| |||| | | |||||| |||| ||||||| ||| ||| || | ||||||||||| ||||||||||||||| |||||||||  || |    
T  235552 gtaggtaaccgatccctcagaagtcgccaagcaaggatagagactttgagatgaacctgtttatgccaaattaactccatattttgatgtaactggggct 235453  T
Q  146 gttcctgtaatgttagcatgtcata 170  Q
    | |||||| |||| | |||||||||    
T  235452 gctcctgtgatgtcaacatgtcata 235428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 17720636 - 17720805
Alignment:
Q  22 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 121  Q
    |||||||||||| ||||  |||| |||||||| ||||| |||| | | |||||  |||| ||||| | ||| |||||| | ||| ||||||| |||||||    
T  17720636 ccacggtttgccaaattatcttttgtaggtaaccgatccctcagaagtcgccatgcaaggatagaaactttgagaggaacctgtgtatgccaaattaact 17720735  T
Q  122 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata--caccacgaactgaataccc 189  Q
    |||  ||| ||||||| | ||| || |||||| |||| |||||||||||  | |||||||| ||||||||    
T  17720736 ccaagttttgatgtaagtgaggctgctcctgtgatgtcagcatgtcataggctccacgaacggaataccc 17720805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 29967996 - 29968080
Alignment:
Q  42 tttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccata 126  Q
    |||||||||||| |||||||||||| | |  ||| |||| ||||| | ||| |||||| | ||||||||||| ||||||||||||    
T  29967996 tttcgtaggtaaccgatctctcaaaagtcctcaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccata 29968080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 134
Target Start/End: Original strand, 25619507 - 25619572
Alignment:
Q  69 ccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatg 134  Q
    ||||||| |||| ||||| | ||| | |||| | ||||||||||||||||||||||||||| ||||    
T  25619507 ccgccaagcaaggatagaaacttttaaaggaacctgtttatgccatattaactccatattttgatg 25619572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 170
Target Start/End: Complemental strand, 4938267 - 4938119
Alignment:
Q  22 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 121  Q
    ||||| |||||| |||| | ||| |||||||| ||||| ||||   | |||||| |||| ||||||| ||| |||||  | ||||||||||| ||||| |    
T  4938267 ccacgatttgccaaattaagttttgtaggtaaccgatccctcattagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagt 4938168  T
Q  122 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 170  Q
    ||| |||  | |||||||  || || |||||| |||| |||||||||||    
T  4938167 ccacattatggtgtaactggggctgctcctgtgatgtcagcatgtcata 4938119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 46 - 170
Target Start/End: Original strand, 42928156 - 42928280
Alignment:
Q  46 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 145  Q
    |||| ||| ||||| |||| | ||||||||||||| ||||||| ||| |||||| | ||||||| ||| ||||||||||||||| |||||||||  || |    
T  42928156 gtagttaaccgatccctcagaagccgccaaacaaggatagagactttgagaggaacctgtttataccaaattaactccatatttggatgtaactggggct 42928255  T
Q  146 gttcctgtaatgttagcatgtcata 170  Q
    |||||||  |||| |||||||||||    
T  42928256 gttcctgcgatgtcagcatgtcata 42928280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 23238385 - 23238533
Alignment:
Q  22 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 121  Q
    |||||||||||| ||||   |||||||||||| |||||||||||| | | |||| |||| ||||| | ||| |||||| | | ||||||||| |||||||    
T  23238385 ccacggtttgccaaattacttttcgtaggtaaccgatctctcaaaagtctccaagcaaggatagaaactttgagaggaacctatttatgccaaattaact 23238484  T
Q  122 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 170  Q
    |||||||  | |||||||  || || |||||| |||||||||| |||||    
T  23238485 ccatattatggtgtaactggggttgctcctgtgatgttagcatatcata 23238533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 170
Target Start/End: Complemental strand, 28535814 - 28535666
Alignment:
Q  22 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 121  Q
    |||||||||||| ||||   ||| |||||||| ||||| |||| | | |||||| |||| ||||| | ||| |||||| | ||| ||||||| |||||||    
T  28535814 ccacggtttgccaaattattttttgtaggtaaccgatccctcagaagtcgccaagcaaggatagaaactttgagaggaacctgtgtatgccaaattaact 28535715  T
Q  122 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 170  Q
    |||| ||| ||||||||| ||| || |||||| |||| |||||||||||    
T  28535714 ccatgttttgatgtaactgaggctgctcctgtgatgtcagcatgtcata 28535666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 8228028 - 8228133
Alignment:
Q  23 cacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactc 122  Q
    ||||||||||| ||||   |||||||||||| |||||||||||| | | |||| |||| ||||| | ||| |||||| | |||||||| || ||||||||    
T  8228028 cacggtttgccaaattacttttcgtaggtaaccgatctctcaaaagtctccaagcaaggatagatactttgagaggaacctgtttatgtcaaattaactc 8228127  T
Q  123 catatt 128  Q
    ||||||    
T  8228128 catatt 8228133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 12825200 - 12825348
Alignment:
Q  22 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 121  Q
    ||||| |||||| |||| | ||| |||||||| ||||| |||| | | |||||| |||| ||| | | ||| |||||| ||||||||||||| ||||| |    
T  12825200 ccacgatttgccaaattaagttttgtaggtaaccgatccctcagaagtcgccaagcaaggatacatactttgagaggaacttgtttatgccaaattaagt 12825299  T
Q  122 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 170  Q
    |||||||  | |||||||  || || |||||| |||| |||||||||||    
T  12825300 ccatattatggtgtaactggggctgctcctgtgatgtcagcatgtcata 12825348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 180
Target Start/End: Complemental strand, 8300297 - 8300161
Alignment:
Q  46 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 145  Q
    |||||||| ||||| |||||  | ||||||||||| ||||| | ||| | |||| | ||||||||||| ||||||||||||||| |||| |  | ||| |    
T  8300297 gtaggtaagcgatccctcaacagtcgccaaacaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacatgaggtt 8300198  T
Q  146 gttcctgtaatgttagcatgtcata--caccacgaac 180  Q
    |||||||| |||| | || ||||||  ||||||||||    
T  8300197 gttcctgtgatgtcaacaggtcatatgcaccacgaac 8300161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 170
Target Start/End: Complemental strand, 30732453 - 30732305
Alignment:
Q  22 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 121  Q
    ||||| |||||| |||| | ||| |||||||| ||||| |||| | | |||||| |||  ||||| | ||| |||||| | ||||||||||| ||||| |    
T  30732453 ccacgatttgccaaattaagttttgtaggtaaccgatccctcagaagtcgccaagcaaagatagatactttgagaggaacctgtttatgccaaattaagt 30732354  T
Q  122 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 170  Q
    |||||||  | |||||||  || || |||||| |||| |||||||||||    
T  30732353 ccatattatggtgtaactggggctgctcctgtgatgtcagcatgtcata 30732305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 170
Target Start/End: Complemental strand, 35983882 - 35983782
Alignment:
Q  70 cgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcat 169  Q
    |||||| |||| ||||| | ||| |||||| | ||| || |||| ||||||||||| ||| ||||||||| ||| || |||||| |||| ||||||||||    
T  35983882 cgccaagcaaggatagatactttgagaggaacctgtgtaagccaaattaactccatgttttgatgtaactgaggctgctcctgtgatgtcagcatgtcat 35983783  T
Q  170 a 170  Q
    |    
T  35983782 a 35983782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 180
Target Start/End: Complemental strand, 33385489 - 33385353
Alignment:
Q  46 gtaggtaaacgatctctcaaatgccgccaaacaagcatagaga-ttttaagaggagcttgtttatgccatattaactccatatttagatgtaactaagga 144  Q
    |||||||||||||| |||||  | |||||| |||| ||||| | ||||||| ||| | ||||||||||| ||||||||||||||| |||| |  | |||     
T  33385489 gtaggtaaacgatccctcaacagtcgccaagcaaggatagaaacttttaag-ggaacctgtttatgccaaattaactccatattttgatgaatatgaggt 33385391  T
Q  145 tgttcctgtaatgttagcatgtc--atacaccacgaac 180  Q
    ||||||||| |||| | || |||  |||||||||||||    
T  33385390 tgttcctgtgatgtcaacaagtcatatacaccacgaac 33385353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 180
Target Start/End: Complemental strand, 18359207 - 18359071
Alignment:
Q  46 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 145  Q
    |||||||||||||| |||||   ||||||| |||| || || | ||| | |||| | ||||||||| | ||||||||||||||| |||| |  | ||| |    
T  18359207 gtaggtaaacgatccctcaacaaccgccaagcaaggattgaaacttttaaaggaacctgtttatgctagattaactccatattttgatgaacatgaggtt 18359108  T
Q  146 gttcctgtaatgttagcatgtc--atacaccacgaac 180  Q
    |||||||| |||| | ||||||  |||||||||||||    
T  18359107 gttcctgtgatgtcaacatgtcatatacaccacgaac 18359071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 180
Target Start/End: Original strand, 27767067 - 27767203
Alignment:
Q  46 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 145  Q
    |||||||||||||| |||||  | |||||| |||| ||| | | ||| | |||| | ||||||||||| ||||||||||||||| |||| |  | ||| |    
T  27767067 gtaggtaaacgatccctcaacagtcgccaagcaaggatataaacttttaaaggaacctgtttatgccaaattaactccatattttgatgaacatgaggtt 27767166  T
Q  146 gttcctgtaatgttagcatgtc--atacaccacgaac 180  Q
    |||||||| |||| | || |||  |||||||||||||    
T  27767167 gttcctgtgatgtcaacaagtcatatacaccacgaac 27767203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 25857539 - 25857451
Alignment:
Q  46 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatg 134  Q
    |||||||| ||||| |||||  | |||||| |||| ||||| | ||| | |||| | ||||||||||| ||||||||||||||| ||||    
T  25857539 gtaggtaagcgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatg 25857451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 170
Target Start/End: Original strand, 31641584 - 31641660
Alignment:
Q  94 agaggagcttgtttatgccatattaactccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 170  Q
    |||||| | ||| ||||||| ||||||||||| ||| ||||||| | ||| || |||||| |||| |||||||||||    
T  31641584 agaggaacctgtgtatgccaaattaactccatgttttgatgtaagtgaggctgctcctgtgatgtcagcatgtcata 31641660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 199
Target Start/End: Complemental strand, 11587334 - 11587158
Alignment:
Q  25 cggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactcca 124  Q
    ||||||||| ||||| ||||||||||||||||||  |||| | |||||||| |||| ||||| | ||| | |||    | ||||||||| ||||||||||    
T  11587334 cggtttgccaaattttctttcgtaggtaaacgattcctcagaagccgccaagcaagaatagatactttgataggtatctatttatgccaaattaactcca 11587235  T
Q  125 tatttagatgtaactaaggatgttcctgtaatgttagcatgtcat--acaccacgaactgaatacccgccaccctga 199  Q
    ||  | |||| |||| ||| ||||||||| |||| ||||||||||  |||||||  |||||||| ||||| ||||||    
T  11587234 tagatggatgcaactgaggctgttcctgtgatgtcagcatgtcatacacaccacagactgaatatccgcctccctga 11587158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 7403914 - 7404062
Alignment:
Q  22 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 121  Q
    |||||||||||| ||||   ||| |||||||| ||||| |||| | | |||||| |||| ||||||| ||| | | || ||||||||||||| |||||||    
T  7403914 ccacggtttgccaaattcttttttgtaggtaaccgatccctcagaagtcgccaagcaaggatagagactttgaaatgaacttgtttatgccaaattaact 7404013  T
Q  122 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 170  Q
     ||||||| |||||||||  || || |||||| |||| |||||||||||    
T  7404014 tcatattttgatgtaactggggctgctcctgtgatgtcagcatgtcata 7404062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 45472824 - 45472736
Alignment:
Q  46 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatg 134  Q
    |||||||||||||| |||||  | ||||||||||| ||||| | ||| | |||| | ||||||||||| ||||||||||||||| ||||    
T  45472824 gtaggtaaacgatccctcaacagtcgccaaacaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatg 45472736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 55725801 - 55725718
Alignment:
Q  46 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatattt 129  Q
    |||||||| ||||| |||||  |||||||| |||| || || | ||| |||||| ||||||||||||| |||||||||||||||    
T  55725801 gtaggtaagcgatccctcaatagccgccaagcaaggattgaaacttttagaggaacttgtttatgccaaattaactccatattt 55725718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 127
Target Start/End: Original strand, 19755269 - 19755373
Alignment:
Q  23 cacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactc 122  Q
    ||||||||||| ||||   ||| |||||||| ||||||||||   | |||||| |||| ||||| | ||| |||||| | ||||||||||| ||||||||    
T  19755269 cacggtttgccaaattattttttgtaggtaaccgatctctcaggagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactc 19755368  T
Q  123 catat 127  Q
    |||||    
T  19755369 catat 19755373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 127
Target Start/End: Complemental strand, 19784537 - 19784433
Alignment:
Q  23 cacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactc 122  Q
    ||||||||||| ||||   ||| |||||||| ||||||||||   | |||||| |||| ||||| | ||| |||||| | ||||||||||| ||||||||    
T  19784537 cacggtttgccaaattattttttgtaggtaaccgatctctcaggagtcgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactc 19784438  T
Q  123 catat 127  Q
    |||||    
T  19784437 catat 19784433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 46 - 128
Target Start/End: Original strand, 15740246 - 15740328
Alignment:
Q  46 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatt 128  Q
    |||||||| ||||||| |||| | | |||| |||| ||||| | ||| |||||| | ||||||||||| ||||||||||||||    
T  15740246 gtaggtaaccgatctcgcaaaagtctccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatatt 15740328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 47686034 - 47685932
Alignment:
Q  22 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 121  Q
    |||||||||||| ||||   ||| |||||||| |||||||||||| | |||||| |||| ||||| | ||| |||||| | |||||||| || ||||| |    
T  47686034 ccacggtttgccaaattatgttttgtaggtaaccgatctctcaaaagtcgccaagcaaggatagatactttgagaggaacctgtttatgtcaaattaagt 47685935  T
Q  122 cca 124  Q
    |||    
T  47685934 cca 47685932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 1828679 - 1828562
Alignment:
Q  22 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 121  Q
    |||||||||||| ||||   ||| |||||||| | ||||| |||  | | |||| |||| ||||| | ||| |||||| | ||||||||||| |||||||    
T  1828679 ccacggtttgccaaattagtttttgtaggtaacctatctcgcaatagtctccaagcaaggatagatactttgagaggaacctgtttatgccaaattaact 1828580  T
Q  122 ccatatttagatgtaact 139  Q
    |||||||  |||||||||    
T  1828579 ccatattatgatgtaact 1828562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 173
Target Start/End: Complemental strand, 19735804 - 19735735
Alignment:
Q  104 gtttatgccatattaactccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcatacac 173  Q
    |||||||||  |||||||||| |||| ||||||||  ||| ||||||||  |||| ||||||||||||||    
T  19735804 gtttatgcctaattaactccaaattttgatgtaacataggttgttcctgcgatgtcagcatgtcatacac 19735735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 170
Target Start/End: Complemental strand, 13271030 - 13270882
Alignment:
Q  22 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 121  Q
    ||||| |||||| |||| | ||| |||||||| ||||| ||||   | |||||| |||| ||||||| ||| |||||  | ||||||||||| ||||| |    
T  13271030 ccacgatttgccaaattaagttttgtaggtaaccgatccctcattagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagt 13270931  T
Q  122 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 170  Q
    ||| |||  | |||||||  || || |||||| |||| |||||||||||    
T  13270930 ccacattatggtgtaactggggctgctcctgtgatgtcagcatgtcata 13270882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 170
Target Start/End: Complemental strand, 23642730 - 23642582
Alignment:
Q  22 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 121  Q
    ||||| |||||| |||| | ||| |||||||| ||||| ||||   | |||||| |||| ||||||| ||| |||||  | ||||||||||| ||||| |    
T  23642730 ccacgatttgccaaattaagttttgtaggtaaccgatccctcattagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagt 23642631  T
Q  122 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 170  Q
    ||| |||  | |||||||  || || |||||| |||| |||||||||||    
T  23642630 ccacattatggtgtaactggggctgctcctgtgatgtcagcatgtcata 23642582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 114
Target Start/End: Complemental strand, 34137108 - 34137010
Alignment:
Q  16 atgataccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccat 114  Q
    |||||||| ||||||||| ||||| |||||||||||||||||||  ||| | |||||||| |||| ||||||| ||| |||||  | ||||||||||||    
T  34137108 atgataccgcggtttgccaaattttctttcgtaggtaaacgatccatcataagccgccaagcaagaatagagactttgagaggtacctgtttatgccat 34137010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 13396389 - 13396537
Alignment:
Q  22 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 121  Q
    |||||||||||| ||||   ||| |||||||| ||||||||||   | |||||| |||| ||||| | ||| |||||| ||||||||||||| |||||||    
T  13396389 ccacggtttgccaaattattttttgtaggtaaccgatctctcaggagtcgccaagcaaggatagatactttgagaggaacttgtttatgccaaattaact 13396488  T
Q  122 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 170  Q
    ||||||   ||||||| |  || || |||||| |||| |||||||||||    
T  13396489 ccatatgatgatgtaattggggctgctcctgtgatgtcagcatgtcata 13396537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 32266565 - 32266667
Alignment:
Q  22 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 121  Q
    |||||||||||| ||||   |||||||||||| |||||||||||| | | |||| |||| ||||| | ||| |||||| | ||||||||||| |||||||    
T  32266565 ccacggtttgccaaattacttttcgtaggtaaccgatctctcaaaagtctccaagcaaggatagatactttgagaggaacctgtttatgccaaattaact 32266664  T
Q  122 cca 124  Q
    |||    
T  32266665 cca 32266667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 180
Target Start/End: Original strand, 37434157 - 37434293
Alignment:
Q  46 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 145  Q
    |||||||||||||| |||||  | |||||| |||| ||||||| ||| | |||| | ||||||||||| ||||||||||||||| |||| |  | ||| |    
T  37434157 gtaggtaaacgatccctcaacagtcgccaagcaagaatagagacttttaaaggaacatgtttatgccaaattaactccatattttgatgaacatgaggtt 37434256  T
Q  146 gttcctgtaatgttagcatgtc--atacaccacgaac 180  Q
    |||||||| |||| | || |||  |||||||||||||    
T  37434257 gttcctgtgatgtcaacaagtcatatacaccacgaac 37434293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 46 - 170
Target Start/End: Original strand, 2170367 - 2170491
Alignment:
Q  46 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 145  Q
    |||||||||||||| |||||  | |||||| |||| ||||| | ||| | |||| | ||||||||||| ||||||||||||||| |||| |  | ||| |    
T  2170367 gtaggtaaacgatccctcaacggtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccagattaactccatattttgatgaacatgaggtt 2170466  T
Q  146 gttcctgtaatgttagcatgtcata 170  Q
    |||||||| |||| | |||||||||    
T  2170467 gttcctgtgatgtcaacatgtcata 2170491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 9922602 - 9922750
Alignment:
Q  22 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 121  Q
    |||||||||||| ||||  |||| |||||||| ||||| |||| | | || ||  |||| ||||| | ||| |||||| | ||| ||||||| |||||||    
T  9922602 ccacggtttgccaaattatcttttgtaggtaaccgatccctcagaagtcgtcatgcaaggatagaaactttgagaggaacctgtgtatgccaaattaact 9922701  T
Q  122 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 170  Q
    |||  ||| ||||||| | ||| || |||||| |||| |||||||||||    
T  9922702 ccaagttttgatgtaagtgaggctgctcctgtgatgtcagcatgtcata 9922750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 173
Target Start/End: Original strand, 13200148 - 13200275
Alignment:
Q  46 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggat 145  Q
    |||||||||||||| |||||  || ||||| |||| || || | ||| |||||| | ||||||||||| | ||||||||||||| |||| |  | ||| |    
T  13200148 gtaggtaaacgatccctcaatagctgccaagcaaggattgaaacttttagaggaacctgtttatgccaaactaactccatattttgatgaacatgaggtt 13200247  T
Q  146 gttcctgtaatgttagcatgtcatacac 173  Q
    |||||||| |||| | ||| ||||||||    
T  13200248 gttcctgtgatgtcaacatatcatacac 13200275  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 170
Target Start/End: Original strand, 7924387 - 7924535
Alignment:
Q  22 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 121  Q
    ||||| |||||| |||| | ||| |||||||| ||||| ||||   | |||||| |||| ||||||| ||| |||||  | ||||||||||| ||||| |    
T  7924387 ccacgatttgccaaattaagttttgtaggtaaccgatccctcattagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagt 7924486  T
Q  122 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 170  Q
    ||| |||  | |||||||  || || |||||| |||| |||||||||||    
T  7924487 ccacattatggtgtaactggggctgctcctgtgatgtcagcatgtcata 7924535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 20824321 - 20824409
Alignment:
Q  46 gtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatg 134  Q
    |||||||| ||||| |||||  | |||||| |||| ||||| | ||| | |||| | ||||||||||| ||||||||||||||| ||||    
T  20824321 gtaggtaagcgatccctcaacagtcgccaagcaaggatagaaacttttaaaggaacctgtttatgccaaattaactccatattttgatg 20824409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 170
Target Start/End: Complemental strand, 41665460 - 41665360
Alignment:
Q  70 cgccaaacaagcatagagattttaagaggagcttgtttatgccatattaactccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcat 169  Q
    |||||| |||| ||||| | ||| |||||| | ||||||||||| |||||||||||||   ||||||| |  || || |||||| |||| ||||||||||    
T  41665460 cgccaagcaaggatagatactttgagaggaacctgtttatgccaaattaactccatatgatgatgtaattggggctgctcctgtgatgtcagcatgtcat 41665361  T
Q  170 a 170  Q
    |    
T  41665360 a 41665360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 170
Target Start/End: Complemental strand, 105982 - 105834
Alignment:
Q  22 ccacggtttgccgaatttactttcgtaggtaaacgatctctcaaatgccgccaaacaagcatagagattttaagaggagcttgtttatgccatattaact 121  Q
    ||||| |||||| |||| | ||| |||||||| ||||| ||||   | |||||| |||| ||||||| ||| |||||  | ||||||||||| ||||| |    
T  105982 ccacgatttgccaaattaagttttgtaggtaaccgatccctcattagtcgccaagcaaggatagagactttgagagggacctgtttatgccaaattaagt 105883  T
Q  122 ccatatttagatgtaactaaggatgttcctgtaatgttagcatgtcata 170  Q
    ||| |||  | |||||||  || || |||||| |||| |||||||||||    
T  105882 ccacattatggtgtaactggggctgctcctgtgatgtcagcatgtcata 105834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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