View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_low_38 (Length: 392)
Name: NF5866_low_38
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 10 - 376
Target Start/End: Complemental strand, 38569014 - 38568648
Alignment:
| Q |
10 |
attatactcgttaatgaatgacttctctttttgtcgtagtctagcgtggtaaatcagggagtgtcgtgtccgaacacctgcatatcaacatctttgcagc |
109 |
Q |
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| T |
38569014 |
attatattcgttaatgaatgatttctctttttgtcgtagtctagcgtggtaaatcggggagtgtcgtgtccgaacacctgcatatcaacatctttgcagc |
38568915 |
T |
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| Q |
110 |
tataccaaacgagctgtacttatgggatgaatgagatttttctttaatttgtagaataaattttcagttacnnnnnnnnnnnnnnnnntaaattaattac |
209 |
Q |
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| T |
38568914 |
tataccaaacgagctgtacttatgggatgaatgagatttttctttaatttgtagaataaattttcagttacatgatgatgatgatgattaaattaattac |
38568815 |
T |
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| Q |
210 |
aggtttctttgaaatatgtatatttggcagtaggatctggggtggcagcatttcttcgtaagtataatatatttgtattaattaagatgatgaannnnnn |
309 |
Q |
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| T |
38568814 |
aggtttctttgaaatatgtatatttggcagtaggatctggggtggcagcatttcttcgtaagtataatatatttgtattaattaagatgatgaatttttt |
38568715 |
T |
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| Q |
310 |
ngtatatgaagaaaagacactaaacttgtgagaaattgtttttgtattttcagaggtgagttgttgg |
376 |
Q |
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| T |
38568714 |
tgtatatgaagaaaagacactaaacttgtgagaaattgtttttgtattttcagaggtgagttgttgg |
38568648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 199 - 376
Target Start/End: Complemental strand, 38527522 - 38527347
Alignment:
| Q |
199 |
aaattaattacaggtttctttgaaatatgtatatttggcagtaggatctggggtggcagcatttcttcgtaagtataatatatttgt-attaa-ttaaga |
296 |
Q |
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| T |
38527522 |
aaattgattacaggtgtctttgaaatttgtatatttggcagtaggatctggggtggcagcatttctccgtaagtatagtat-tttgtaattaatttaaga |
38527424 |
T |
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| Q |
297 |
tgatgaannnnnnngtatatgaagaaaagacactaaacttgtgagaaattgtttttgtattttcagaggtgagttgttgg |
376 |
Q |
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| T |
38527423 |
tgatgaatttttttgtatatgaagaaaagacactaaacttatga-taattg--tttgtattttcagaggtgagttgttgg |
38527347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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