View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_low_43 (Length: 375)
Name: NF5866_low_43
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 36802791 - 36803168
Alignment:
| Q |
1 |
aaaaatattatatccttctttcctacttcaaaaaataacaaatgtaggttacattttcttgtaaagaaaagaataaccagcactttttagttgagcgtgg |
100 |
Q |
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| T |
36802791 |
aaaaatattatatccttctttcctacttcaaaaaataacaaatgtaggttacattttcttgtaaagaaaaaaataaccagca-tttttagttgagcgtgg |
36802889 |
T |
|
| Q |
101 |
cacttaagtctcatggtcatggatacacagagatgatcgaa---------------------cacaaccaccacacttaaattattaacggaaaatcaca |
179 |
Q |
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| T |
36802890 |
cacttaagtctcatggtcatggatacacatagatgatcgaaaattggtgtacctaatttcaacacaaccaccacacttaaattattaacggaaaatcaca |
36802989 |
T |
|
| Q |
180 |
aatgttcaaatattaccaaggaatcaactcatacacgatttcactaacgagtaataaaaataaaatttgaggtgagcagattatgaaagtattcctttgg |
279 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36802990 |
aatgttcaaatattaccaaggaatcaactcatacacgatttcactaacgagtaataaaaataaaatttgaggtgagcagattatgaaactattcctttgg |
36803089 |
T |
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| Q |
280 |
cataccttttattttactcgcattttattcctattttggtagatattcaaattattttgaggaaaaaatggtcattttt |
358 |
Q |
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| T |
36803090 |
cgtaccttttattttactcgcattttattcctattttggtagatattcaaattattttgaggaaaaaatggtcattttt |
36803168 |
T |
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