View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5866_low_45 (Length: 362)
Name: NF5866_low_45
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_45 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 104 - 352
Target Start/End: Original strand, 31219438 - 31219693
Alignment:
| Q |
104 |
cttagtgttactcatcaattcatgtttcatcccatcacttttataatgtcattgaaagttttcctcttcttggaagaaaggtaaataaagcaattcacgt |
203 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31219438 |
cttagtattactcatcaatccatgtttcatcccatcacttttataatgtcgttgaaagttttactcttcttggaagaaaggtaaataaagcaattcacgt |
31219537 |
T |
|
| Q |
204 |
tttcaacattttgt-------aggcttagtcttagaactcacgctattgtgattcatggacattgaaacgttttgtgattcaaaggatctaagtatagca |
296 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31219538 |
tttcaacattttgtcatgtttaggcttagtcttagaactcacgctattgtgattcatggacattgaaacgttttgtgattcaaagaatctaagtatagca |
31219637 |
T |
|
| Q |
297 |
ctcttcgtacacatgtatataagtggtatacaagtttagatttcaattttgtctct |
352 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31219638 |
ctcttcgtacatatgtatataagtggtatacaagtttatatttcaattttgtctct |
31219693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 31219191 - 31219282
Alignment:
| Q |
17 |
agatggtgatcgtacttcttcgtttaccgatgaccaaggagtgtcttctataccttaatgttatatatacttcctgcatcacaacgtcttagtg |
110 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31219191 |
agatggtgatcgtacttcttcgtttactgatgaccaaggagtgtcttctataccttaatgt--tatatacttcctgcatcacaacgtcttagtg |
31219282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University