View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_low_52 (Length: 352)
Name: NF5866_low_52
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 99 - 334
Target Start/End: Original strand, 52392532 - 52392767
Alignment:
| Q |
99 |
acttttaatttggaatatataaactttatattgaatttggatatggttgcattgggtgagtgcaggtggaccaagagcaactgggcgtttcttaatgaac |
198 |
Q |
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| T |
52392532 |
acttttaatttggaatatataaactttatattgaatttggatatggttgcattgggtgagtgcaggtggaccaagagcaactgggcgtttcttaatgaac |
52392631 |
T |
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| Q |
199 |
ctccagtgatggaagctcctaccagcaagtatgtatcgcagtatcacgtagccaacttgggatcatcaaaattaaacacaggacatggaattagtgcttg |
298 |
Q |
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| T |
52392632 |
ctccagtgatggaagctcctaccagcaagtatgcatcgcagtatcacgtagccaacttgggatcatcaaaattaaacacaggacatggaattagtgcttg |
52392731 |
T |
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| Q |
299 |
atctgaatgatctatctaaatctaattccacccttt |
334 |
Q |
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| T |
52392732 |
atctgaatgatctatctaaatctaattccacccttt |
52392767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 52392404 - 52392505
Alignment:
| Q |
1 |
cagcttaaaaatatgaagaaaaatggctggtaaactatcttagttgtttgattcgaatttcggtccatcttttaaaaaatcaatgttccaattcaactac |
100 |
Q |
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| T |
52392404 |
cagcttaaaaatatgaagaaaaatggctggtaaactatcttagttgtttgattcgaatttcggtccatcttttaaaaaatcaatgttccaattcaactac |
52392503 |
T |
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| Q |
101 |
tt |
102 |
Q |
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|| |
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| T |
52392504 |
tt |
52392505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 7117127 - 7117203
Alignment:
| Q |
155 |
tgagtgcaggtggaccaagagcaactgggcgtttcttaatgaacctccagtgatggaagctcctaccagcaagtatg |
231 |
Q |
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| T |
7117127 |
tgagtgcaggtggactaagagtaactgggcatttctgaatgagccaccagtaatggaagctgcatccagcaagtatg |
7117203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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