View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_low_53 (Length: 347)
Name: NF5866_low_53
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_53 |
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| [»] scaffold0090 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 5e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 31 - 335
Target Start/End: Original strand, 10524955 - 10525266
Alignment:
| Q |
31 |
ttcaacgaagaaataatgcagcctatgagtttagtgctcgtttcaacttgagatggtatcgttccccaacgaagagatagtgtggtatatgtgcacattg |
130 |
Q |
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| T |
10524955 |
ttcaacgaagaattaatgtagcctataaatttagtgcttgtagtaacttgagatggtatcattcgtaaacaaagagatagtgtggtatatgtgcacattg |
10525054 |
T |
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| Q |
131 |
tggaatgagataaacgaataatgagttttatttctattactttcaatttcaattgtagatgtgtttgtagaactttgtgtatgacttatgattggatcat |
230 |
Q |
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| T |
10525055 |
tggaatgagataaacgaataatgtgatttatttctattactttc------aattgtagatgtgtttgtagaactttgtgtatgacttatgattggatcat |
10525148 |
T |
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| Q |
231 |
gctaaagattttattgaaaagtgatatccttaagggaaataagtatg-------------aaaggatgatacgtttagcttaaaattctttttggattaa |
317 |
Q |
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| T |
10525149 |
gctaaagattttattgaaaagtgttatccttaagggaattaattatgaatgagagttttcaaaggatgatacatttagtttaaaattcattttggattaa |
10525248 |
T |
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| Q |
318 |
aactcgtaaaattcttac |
335 |
Q |
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| T |
10525249 |
aactcgcaaaattcttac |
10525266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 185 - 279
Target Start/End: Original strand, 19389942 - 19390036
Alignment:
| Q |
185 |
gtagatgtgtttgtagaactttgtgtatgacttatgattggatcatgctaaagattttattgaaaagtgatatccttaagggaaataagtatgaa |
279 |
Q |
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| T |
19389942 |
gtagatgtgtttgtagaacttcatctatgacttgtgattggatcatgctaaagattttattggaaagtgttatccttaagggatataagtatgaa |
19390036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 147
Target Start/End: Original strand, 13468164 - 13468217
Alignment:
| Q |
94 |
ccccaacgaagagatagtgtggtatatgtgcacattgtggaatgagataaacga |
147 |
Q |
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| T |
13468164 |
ccccaacgaagagttaatgtggtctatgtgcacatggtggaaggaaataaacga |
13468217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 274
Target Start/End: Complemental strand, 50560 - 50505
Alignment:
| Q |
219 |
tgattggatcatgctaaagattttattgaaaagtgatatccttaagggaaataagt |
274 |
Q |
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| T |
50560 |
tgattggatcatgctaaacattttattgaaaagtgttatccctaagggatataagt |
50505 |
T |
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