View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5866_low_56 (Length: 326)
Name: NF5866_low_56
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_56 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 12 - 127
Target Start/End: Original strand, 289172 - 289287
Alignment:
| Q |
12 |
agagagataaagtgtaatgacaatgatggcatggctttgcttataaaatatttcattctgattagttgggaccggtagcgggtttaaatccattaaaatg |
111 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||| |
|
|
| T |
289172 |
agagagataaagtgtaatgacaataatggcatggctttgcttataaaatatttcattctgattagttgggagcagtgacgggtttaaatccattaaaatg |
289271 |
T |
|
| Q |
112 |
caacgacatgatattg |
127 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
289272 |
caacgacatggtattg |
289287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 231 - 313
Target Start/End: Original strand, 289391 - 289473
Alignment:
| Q |
231 |
taataatgtatagcaagttcaataagacaatatttaggagtacaaataaatatgatgagataaactcaaatgcacaattaatg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
289391 |
taataatgtatagcaagttcaataagacaatatttaggagtacaaataaatatgatgagataaactgaaatgcacaattaatg |
289473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 234 - 313
Target Start/End: Original strand, 24531129 - 24531209
Alignment:
| Q |
234 |
taatgtatagcaagttcaataagacaatatttaggagtacaaata-aatatgatgagataaactcaaatgcacaattaatg |
313 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||| ||||||| | ||||||||||||| |
|
|
| T |
24531129 |
taatgtatagaaagttcaataggacaatatttaggagtacaaatataatatgatgagctaaactctagtgcacaattaatg |
24531209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 313
Target Start/End: Original strand, 24523704 - 24523784
Alignment:
| Q |
234 |
taatgtatagcaagttcaataagacaatatttaggagtacaaata-aatatgatgagataaactcaaatgcacaattaatg |
313 |
Q |
| |
|
|||||||||| ||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||| | |||||| |||||| |
|
|
| T |
24523704 |
taatgtatagaaagggcaataggacaatatttaggagtacaaatataatatgatgagctaaactctagtgcacagttaatg |
24523784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University