View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_low_57 (Length: 322)
Name: NF5866_low_57
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 150 - 306
Target Start/End: Original strand, 22391046 - 22391202
Alignment:
| Q |
150 |
tatttctaatggaaattttatttgagatttgtctctgatttctctagtggaaatgatgtttcatatgaaatgtgattttaatctctttggggagattgtc |
249 |
Q |
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| T |
22391046 |
tatttctaatggaaattttatttgagatttgtctctgatttctctagtggaaatgatgtttcatatgaaatgtgattttaatctctttggggagattgtc |
22391145 |
T |
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| Q |
250 |
atttcttttatgagaaagaagttgtgtttcgtaatggaatagtgttgcatttgaaac |
306 |
Q |
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| T |
22391146 |
atttcttttacgagaaagaagttgtgttccgtaatggaatagtgttgcatttgaaac |
22391202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 153 - 306
Target Start/End: Original strand, 42256272 - 42256425
Alignment:
| Q |
153 |
ttctaatggaaattttatttgagatttgtctctgatttctctagtggaaatgatgtttcatatgaaatgtgattttaatctctttggggagattgtcatt |
252 |
Q |
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| T |
42256272 |
ttctaatggaaattttatttgagatttgtctctgatttctctagtggaaatgatgtttcatatgaaatgtgattttaatctctttggggagattgtcatt |
42256371 |
T |
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| Q |
253 |
tcttttatgagaaagaagttgtgtttcgtaatggaatagtgttgcatttgaaac |
306 |
Q |
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| T |
42256372 |
tcttttatgagaaagaagttgtgttccgtaatggaatagtgtttcatttgaaac |
42256425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 22390887 - 22391020
Alignment:
| Q |
1 |
acatgttgaaaatatgggaattgtaaagtcctttgatatttttaattagtgggagcagacattaattgcatgtgttcatttttaaattaatgaatttatt |
100 |
Q |
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| T |
22390887 |
acatgttgaaaatatgggaattgtaaagtcctttgatatttttaattagtgggagcagacattaattgtatgtgttcatttttaaattaatgaatttatt |
22390986 |
T |
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| Q |
101 |
ctcattttcttttgattatttctatcatgcttaa |
134 |
Q |
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| T |
22390987 |
ctcattttcttttgattatttctatcatgcttaa |
22391020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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