View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5866_low_58 (Length: 318)

Name: NF5866_low_58
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5866_low_58
NF5866_low_58
[»] chr3 (1 HSPs)
chr3 (8-300)||(42651175-42651467)


Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 8 - 300
Target Start/End: Complemental strand, 42651467 - 42651175
Alignment:
Q  8 attattctcatgtgaaaagggacattggatggtttttcctttgattctgacgaggaagatggtaagaggcagaaaaccacccacccatctgatcaaaacg 107  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42651467 attattttcatgtgaaaagggacattggatggtttttcctttgattctgacgaggaagatggtaagaggcagaaaaccacccacccatctgatcaaaacg 42651368  T
Q  108 agcacgctgaggaacagacacctggtaaatccaaacggaaagcggacaaaacatcagtaagtttcccagttgctattggttttagatttgtctgtattta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42651367 agcacgctgaggaacagacacctggtaaatccaaacggaaagcggacaaaacatcagtaagtttcccagttgctattggttttagatttgtctgtattta 42651268  T
Q  208 taattgaaattgctggtgcatacatatttagttgctgaaaattcgatgcagggtgctgaaaagaaaagaggtaaaaatactggaggaaaatca 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42651267 taattgaaattgctggtgcatacatatttagttgctgaaaattcgatgcagggtgctgaaaagaaaagaggtaaaaatactggaggaaaatca 42651175  T

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