View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_low_60 (Length: 313)
Name: NF5866_low_60
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_60 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 33 - 298
Target Start/End: Original strand, 3903626 - 3903891
Alignment:
| Q |
33 |
aggactaaacgtgtagatttggaaataaaggaacaaaaattgtgaataaggcaaaatatggtatcaaaactcaacttaagcttaaacannnnnnnctgaa |
132 |
Q |
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| T |
3903626 |
aggactaaacgtgtagatttggaaataaaggaacaaaaattgtgaataaggcaaaatatggtatcaaaactcaacttaagcttaaacatttttttctgaa |
3903725 |
T |
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| Q |
133 |
gaagactaaagcttatacattattactgcttttctgttacatttcaattttttgtttgttgttgaaaaagttcggtatatgccttcattcatagtccacc |
232 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3903726 |
gaagactaaagcttatacattattactgtttttctgttacatttcaattttttgtttgttgttgaaaaagttcggtatatgccttcattcatagtccacc |
3903825 |
T |
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| Q |
233 |
aattttcaatttctttatgttcacttcttcgccatgctggtcaaaaattattgaaatacaacacag |
298 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3903826 |
aatttttaatttctttatgttcacttcttcgccatgctggtccaaaattattgaaatacaacacag |
3903891 |
T |
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