View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_low_62 (Length: 309)
Name: NF5866_low_62
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_62 |
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| [»] scaffold0182 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0182 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 290
Target Start/End: Complemental strand, 28619 - 28353
Alignment:
| Q |
10 |
aagaatatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaaaggggcaccgaaaagaataaagagcggcattga |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28619 |
aagaaaatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaaaggggcaccgaaaagaataaagagcggcattga |
28520 |
T |
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| Q |
110 |
aagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttcttaaatcaaacttcttaacatattattattta |
209 |
Q |
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| T |
28519 |
aagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttc--------------ttaacatattattattta |
28434 |
T |
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| Q |
210 |
acatgatttctgattgttgtgatttttgttctgtgattatgtgaaatgaaggctgcaatcgttgaaaaagaagcaatattt |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28433 |
acatgatttctgattgttgtgatttttgttctgtgattatgtgaaatgaaggctgcaatcgttgaaaaagaagcaatattt |
28353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 10 - 290
Target Start/End: Complemental strand, 275729 - 275463
Alignment:
| Q |
10 |
aagaatatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaaaggggcaccgaaaagaataaagagcggcattga |
109 |
Q |
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| T |
275729 |
aagaaaatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaaaggggcaccgaaaagaataaagagcggcattga |
275630 |
T |
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| Q |
110 |
aagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttcttaaatcaaacttcttaacatattattattta |
209 |
Q |
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| T |
275629 |
aagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttc--------------ttaacatattattattta |
275544 |
T |
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| Q |
210 |
acatgatttctgattgttgtgatttttgttctgtgattatgtgaaatgaaggctgcaatcgttgaaaaagaagcaatattt |
290 |
Q |
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| T |
275543 |
acatgatttctgattgttgtgatttttgttctgtgattatgtgaaatgaaggctgcaatcgttgaaaaagaagcaatattt |
275463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 290
Target Start/End: Complemental strand, 26396334 - 26396067
Alignment:
| Q |
10 |
aagaatatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaaaggggcaccgaaaa-gaataaagagcggcattg |
108 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26396334 |
aagaaaatagcaggaagagcactttgcttgacaagaaactacttgatcctcaagattcaaaaacaaaaggggcaccgaaaaagaataaagagcggcattg |
26396235 |
T |
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| Q |
109 |
aaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttcttaaatcaaacttcttaacatattattattt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26396234 |
aaagaggtcgaaagagaaaatctactggtagcgtgaaaaaggttggaatttattattttatcaaacttc--------------ttaacatattattattt |
26396149 |
T |
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| Q |
209 |
aacatgatttctgattgttgtgatttttgttctgtgattatgtgaaatgaaggctgcaatcgttgaaaaagaagcaatattt |
290 |
Q |
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| T |
26396148 |
aacatgatttctgattgttgtgatttttgttctgtgattatgtgaaatgaaggctgcaatcgttgaaaaagaagcaatattt |
26396067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 26460346 - 26460430
Alignment:
| Q |
42 |
aagaaactacttgatcctcaagattcaaaaacaaaaggggcaccgaaaagaataaagagcggcattgaaagaggtcgaaagagaa |
126 |
Q |
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|||||| ||||||||||| || |||| |||||||| || ||||||||||| ||||| || ||||| |||||||| ||||||| |
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| T |
26460346 |
aagaaattacttgatcctaaaccagcaaacacaaaaggagctccgaaaagaatcaagagtgggattgagagaggtcgtaagagaa |
26460430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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