View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_low_68 (Length: 269)
Name: NF5866_low_68
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_68 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 81 - 269
Target Start/End: Complemental strand, 36739560 - 36739372
Alignment:
| Q |
81 |
attatagagttgtactttttccgaaaataaatatttaattttatgatacctcttaaattattaatattcaaggaatttctagcatcaaatttatgtgtct |
180 |
Q |
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| T |
36739560 |
attatagtgttgtactttttccgaaaataaatatttaattttatgatacctcttaaattattaatattcaaggaatttctagcatcaaatttatgtgtct |
36739461 |
T |
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| Q |
181 |
acgctccgatgctatgctaacttgttttcaaaatatacatggccatgttctagcatgtcaaaaacaatgagatatgatggaagaaagtt |
269 |
Q |
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| T |
36739460 |
acgctccgatgctatgctaacttgttttcaaaatatacatggccatgttctagcatgtctaaaacaatgagatatgatggaagaaagtt |
36739372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 13 - 269
Target Start/End: Original strand, 39180599 - 39180845
Alignment:
| Q |
13 |
gagaggaacatacttatatccaatcatgaatttacgaatgcagaacaacttaactcggttaaatcaatattatagagttgtactttttccgaaaataaat |
112 |
Q |
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| T |
39180599 |
gagatgaacatgcttatatccaatcttaaatttatgaattcagaacaacttgaatcggttaaatcaatattatagagttgtactttttcggaaaataaat |
39180698 |
T |
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| Q |
113 |
atttaattttatgatacctcttaaattattaatattcaaggaatttctagcatcaaatttatgtgtctacgctccgatgctatgctaacttgttttcaaa |
212 |
Q |
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| T |
39180699 |
atttaattttatgttacctctt-aattattaatatttgaggaatttctggcatcaa----atgtgtctacgttc----gc-atgctaacttgttttcaaa |
39180788 |
T |
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| Q |
213 |
atatacatggccatgttctagcatgtcaaaaacaatgagatatgatggaagaaagtt |
269 |
Q |
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| T |
39180789 |
atatacatggccgtgttctagcatgtctaaaacaatgagatatgatggaagaaagtt |
39180845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 260
Target Start/End: Original strand, 39181068 - 39181113
Alignment:
| Q |
215 |
atacatggccatgttctagcatgtcaaaaacaatgagatatgatgg |
260 |
Q |
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| T |
39181068 |
atacatgcccatgttctagcatgtccaaaacaatgagatatgatgg |
39181113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 260
Target Start/End: Complemental strand, 36739157 - 36739112
Alignment:
| Q |
215 |
atacatggccatgttctagcatgtcaaaaacaatgagatatgatgg |
260 |
Q |
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| T |
36739157 |
atacatgcccgtgttctagcatgtctaaaacaatgagatatgatgg |
36739112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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