View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5866_low_7 (Length: 635)
Name: NF5866_low_7
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 593; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 593; E-Value: 0
Query Start/End: Original strand, 7 - 619
Target Start/End: Original strand, 773487 - 774099
Alignment:
| Q |
7 |
tccaagaatatccacatatgagcgcatcttacttcttatggttgtatcacttgaaagtagtttaccatgcttgtcataccctacaaggtattcgaaacat |
106 |
Q |
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| T |
773487 |
tccaacaacatccacatatgagcgcatcttacttcttatggttgtatcacttgaaagtagtttaccatgcttgtcataccctacaaggtattcgaaacat |
773586 |
T |
|
| Q |
107 |
ggattatagaactagaatcaattcaccatgtgttataaataacatcaatcatattagacaaatgagattgatttacctttattttcaagtcatttctaga |
206 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
773587 |
ggattatataactagaatcaattcaccatgtgttataaataacatcaatcatattagacaaatgagattgatttacctttattttcaagtcatttctaga |
773686 |
T |
|
| Q |
207 |
atttagtaccttccttcttcgtgtgtcccttcctattatgaaattaacactaactttttcttaatttcatattggagaggtattttacctttacccttac |
306 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
773687 |
atttaataccttctttcttcgtgtgtcccttcctattatgaaattaacactaactttttcttaatttcatattggagaggtattttacctttacccttac |
773786 |
T |
|
| Q |
307 |
aaaattaacaccgactttttcttaatttcatattggggaggtattttaccattaaccttttcttgacttggttcgaattcatgtcattagagtataccca |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
773787 |
aaaattaacaccgactttttcttaatttcatattggggaggtattttaccattaaccttttcttgacttggttcgaattcatgtcattagagtataccca |
773886 |
T |
|
| Q |
407 |
ttcatttccatcaccaacctttcttattcttgagttcattaactgacatttttctttatgtgtgttgtaagaaatgaatggttaatatggaggtggaata |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
773887 |
ttcatttccatcaccaacctttcttattcttgagttcattaactgacatttttctttatgtgtgttgtaagaaatgaatggttaatatggaggtggaata |
773986 |
T |
|
| Q |
507 |
gtgttcaaaatataatgcacaaggtaaagcatcagacatgccaacctcaagtgtctttagttgtgctgctatgcccctcaaccgcataatgtgcctacac |
606 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
773987 |
gtgttcaaaatataatgcacaaggtaaagcatcagacatgccaacctcaagtgtctttagttgtgctgctatgcccctcaaccgcataatgtgcctacac |
774086 |
T |
|
| Q |
607 |
acagtttcaaatg |
619 |
Q |
| |
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||||||||||||| |
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| T |
774087 |
acagtttcaaatg |
774099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 438 - 600
Target Start/End: Original strand, 36836576 - 36836741
Alignment:
| Q |
438 |
gagttcattaactgac-atttttctttatgtgtgttgtaagaaatg---aatggttaatatggaggtggaatagtgttcaaaatataatgcacaaggtaa |
533 |
Q |
| |
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||||||||||| |||| |||||||||||||||||||||||||||| | ||||| ||| |||||||||| || |||||||||||||| |||||| || |
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| T |
36836576 |
gagttcattaattgaccatttttctttatgtgtgttgtaagaaatttttagtggttcatacggaggtggaagggtattcaaaatataatgaacaagg-aa |
36836674 |
T |
|
| Q |
534 |
agcatcagacatgccaacctcaagtgtctttagttgtgctgctatgcccctcaaccgcataatgtgc |
600 |
Q |
| |
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|| ||||||||| ||||||||||||||||||||||||| || ||| | |||| |||||||||||| |
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| T |
36836675 |
agattcagacatgtcaacctcaagtgtctttagttgtgcggcaatgtcactcattcgcataatgtgc |
36836741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 75 - 165
Target Start/End: Complemental strand, 7453006 - 7452916
Alignment:
| Q |
75 |
gcttgtcataccctacaaggtattcgaaacatggattatagaactagaatcaattcaccatgtgttataaataacatcaatcatattagac |
165 |
Q |
| |
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|||||||||||||| ||||||||| |||||||||||| |||||| ||||||||| |||||||||||||||||||||| || |||||||||| |
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| T |
7453006 |
gcttgtcataccctgcaaggtattggaaacatggattgtagaaccagaatcaatccaccatgtgttataaataacattaaccatattagac |
7452916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 304
Target Start/End: Original strand, 36836229 - 36836470
Alignment:
| Q |
75 |
gcttgtcataccctacaaggtattcgaaacatggattatagaactagaatcaattcaccatgtgttataaataacatcaatcatattag----------- |
163 |
Q |
| |
|
|||||||||||||| ||||||||| |||| ||||||| || ||| | ||||||| ||||| ||||||||||||||||||| ||||||| |
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| T |
36836229 |
gcttgtcataccctgcaaggtattagaaatatggattgta-aacca-aatcaatccaccaagtgttataaataacatcaactatattagattcataacaa |
36836326 |
T |
|
| Q |
164 |
-acaaatgagattgatttacctttattttcaagtcatttctagaatttagtaccttccttcttcgtgtgtcccttcctattatgaaattaacact--aac |
260 |
Q |
| |
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|||||||||||| ||||||||||||||||| ||||||| |||| || || |||||||| ||||||| ||| ||||| |||| |||| | ||| |
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| T |
36836327 |
aacaaatgagattagtttacctttattttcaaaccatttctgaaattcagaacaatccttctttatgtgtccattcatattacaaaatgaacatttgaac |
36836426 |
T |
|
| Q |
261 |
tttttcttaatttcatattggagaggtattttacctttaccctt |
304 |
Q |
| |
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|||||||||||| || | | |||||||||||||||| ||||| |
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| T |
36836427 |
tttttcttaattccaccatcgggaggtattttacctttcccctt |
36836470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 19157915 - 19158005
Alignment:
| Q |
75 |
gcttgtcataccctacaaggtattcgaaacatggattatagaactagaatcaattcaccatgtgttataaataacatcaatcatattagac |
165 |
Q |
| |
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|||||||||||||| ||||||||| |||||||||||| |||||| ||||||||| |||||||||||||||||||||| || |||||||||| |
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| T |
19157915 |
gcttgtcataccctgcaaggtattggaaacatggattgtagaaccagaatcaatccaccatgtgttataaataacattaaccatattagac |
19158005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 75 - 165
Target Start/End: Complemental strand, 18477250 - 18477160
Alignment:
| Q |
75 |
gcttgtcataccctacaaggtattcgaaacatggattatagaactagaatcaattcaccatgtgttataaataacatcaatcatattagac |
165 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||| |||||| ||||||||| |||||||||||||||||||||| || |||||||||| |
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| T |
18477250 |
gcttgtcataccctgcaaggtattggaaacatggattgtagaaccagaatcaatccaccatgtgttataaataacattaaccatattagac |
18477160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 7e-23; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 455 - 609
Target Start/End: Original strand, 51981817 - 51981973
Alignment:
| Q |
455 |
tttttctttatgtgtgttgtaagaaatg---aatggttaatatggaggtggaatagtgttcaaaatataatgcacaaggtaaagcatcagacatgccaac |
551 |
Q |
| |
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||||||||||||||||||||||||||| | ||||| ||| |||||||||| || |||||||||||||| | |||| |||| ||||||||| |||| |
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| T |
51981817 |
tttttctttatgtgtgttgtaagaaatttttagtggttcatacggaggtggaagggtattcaaaatataatgaataagg-aaagattcagacatgtcaac |
51981915 |
T |
|
| Q |
552 |
ctcaagtgtctttagttgtgctgctatgcccctcaaccgcataatgtgcctacacaca |
609 |
Q |
| |
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|||||||||||||||||||||||| || | |||| |||||||||||| ||||||| |
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| T |
51981916 |
ctcaagtgtctttagttgtgctgcaatatcactcattcgcataatgtgctcacacaca |
51981973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 304
Target Start/End: Original strand, 51981452 - 51981692
Alignment:
| Q |
75 |
gcttgtcataccctacaaggtattcgaaacatggattatagaactagaatcaattcaccatgtgttataaataacatcaatcatattag----------- |
163 |
Q |
| |
|
|||||||||||||||||||||||| | || ||||||| || ||| | ||||||| ||||| ||||||||||||||||||| ||||||| |
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| T |
51981452 |
gcttgtcataccctacaaggtattagtaatatggattgta-aacca-aatcaatccaccaagtgttataaataacatcaactatattagattcataacaa |
51981549 |
T |
|
| Q |
164 |
acaaatgagattgatttacctttattttcaagtcatttctagaatttagtaccttccttcttcgtgtgtcccttcctattatgaaattaacact--aact |
261 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||| |||| || || |||||||| ||||||| ||| ||||| |||| |||||| ||| |
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| T |
51981550 |
acaaatgagattagtttacctttattttcaaaccatttctgaaattcagaacaatccttctttatgtgtccattcatattagaaaatgaacacttggact |
51981649 |
T |
|
| Q |
262 |
ttttcttaatttcatattggagaggtattttacctttaccctt |
304 |
Q |
| |
|
||||||||||| || | | |||||||||||||||| ||||| |
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|
| T |
51981650 |
ttttcttaattccaccatcgggaggtattttacctttcccctt |
51981692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 456 - 570
Target Start/End: Complemental strand, 7925849 - 7925733
Alignment:
| Q |
456 |
ttttctttatgtgtgttgtaagaaa---tgaatggttaatatggaggtggaatagtgttcaaaatataatgcacaaggtaaagcatcagacatgccaacc |
552 |
Q |
| |
|
|||||||||| |||||||||||||| | ||||||| |||||||||||||| ||||||||||||||||||| |||| ||| |||||||| ||||| |
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| T |
7925849 |
ttttctttatatgtgttgtaagaaaattttaatggttcatatggaggtggaagggtgttcaaaatataatgcaaaagg-aaatattcagacatatcaacc |
7925751 |
T |
|
| Q |
553 |
tcaagtgtctttagttgt |
570 |
Q |
| |
|
||||||||||| ||||| |
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|
| T |
7925750 |
gcaagtgtcttttgttgt |
7925733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 165
Target Start/End: Complemental strand, 7926127 - 7926056
Alignment:
| Q |
94 |
gtattcgaaacatggattatagaactagaatcaattcaccatgtgttataaataacatcaatcatattagac |
165 |
Q |
| |
|
|||||| ||||||||||| |||||| | ||||||| ||||| ||||||||||||||||||| ||||||||| |
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|
| T |
7926127 |
gtattcaaaacatggattgtagaaccaaaatcaatccaccaagtgttataaataacatcaactatattagac |
7926056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 392 - 437
Target Start/End: Complemental strand, 7925930 - 7925885
Alignment:
| Q |
392 |
attagagtatacccattcatttccatcaccaacctttcttattctt |
437 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
7925930 |
attagagtatacccattcatttccatcgccaacctttcttcttctt |
7925885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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