View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_low_72 (Length: 258)
Name: NF5866_low_72
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_72 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 22 - 248
Target Start/End: Original strand, 11205206 - 11205432
Alignment:
| Q |
22 |
ggggcgtggttctgagaagatccaatggccaattcatcttgaggtatgtatactttgattcgaaggctaagtaataagtgtttttgaggaccactgcaaa |
121 |
Q |
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| T |
11205206 |
ggggcgtggttctgagaagatccaatggccaattcatcttgaggtatgtatactttgattcgaaggctaagtaataagtgtttttgaggaccactacaaa |
11205305 |
T |
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| Q |
122 |
tctacaatgccttttgatccacaaatctttagaaatactttttaacttttttgaacttatctttgtctaatatcatgaatttagtcgttggttctaagct |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
11205306 |
tctacaatgccttttgatccacaaatctttagaaatacttttcaacttttttgaacttatctttgtctaatatcatgaatttagtcgttggtcctaagct |
11205405 |
T |
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| Q |
222 |
cataactaatcaccattcttgcctttg |
248 |
Q |
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| T |
11205406 |
cataactaatcaccattcttgcctttg |
11205432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 22 - 243
Target Start/End: Original strand, 38181489 - 38181708
Alignment:
| Q |
22 |
ggggcgtggttctgagaagatccaatggccaattcatcttgaggtatgtatactttgattcgaaggctaagt-aataagtgtttttgaggaccactgcaa |
120 |
Q |
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| T |
38181489 |
ggggcgtggttctgagaagatccaatggccaattcatcttgaggtatgtatactttgatttgaaggctaagtaaataagtgtttttgaggacca------ |
38181582 |
T |
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| Q |
121 |
atctacaatgccttttgatccacaaat-----ctttagaaatactttttaacttttttgaacttatctttgtctaatatcatgaatttagtcgttggttc |
215 |
Q |
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| T |
38181583 |
--cgataatgccttttgatccttaaatcttaactttagaaatactttctaacttttttgaacttatctttatctaatacgatgaatttaaccattgatcc |
38181680 |
T |
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| Q |
216 |
taagctcataactaatcaccattcttgc |
243 |
Q |
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| T |
38181681 |
taagctcataactaatcaccattcttgc |
38181708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 22 - 248
Target Start/End: Original strand, 49009021 - 49009247
Alignment:
| Q |
22 |
ggggcgtggttctgagaagatccaatggccaattcatcttgaggtatgtatactttgattcgaaggctaagtaataagtgtttttgaggaccactgcaaa |
121 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||| |
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| T |
49009021 |
ggggcgtggttctgagaaaatccaatggccaattcatcttgaggtatgtatactttgatttgatggctaagtaataagtgtttttgaggaccactacaaa |
49009120 |
T |
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| Q |
122 |
tctacaatgccttttgatccacaaatctttagaaatactttttaacttttttgaacttatctttgtctaatatcatgaatttagtcgttggttctaagct |
221 |
Q |
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||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
49009121 |
tctacaatgccatttgatccttaaatctttagaaatactttttaacttttttgaacttatctttgtctaatatcatgaatttagccgttggtcctaagct |
49009220 |
T |
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| Q |
222 |
cataactaatcaccattcttgcctttg |
248 |
Q |
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||||||||||||||||||||||||||| |
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| T |
49009221 |
cataactaatcaccattcttgcctttg |
49009247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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