View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_low_74 (Length: 253)
Name: NF5866_low_74
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_74 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 26099462 - 26099218
Alignment:
| Q |
1 |
taatggtacacttcgtaaagatcatgatcatgttttaaacatggtgttaagaaggtaattaattaattaacactaattacacaaacacaaacacaaatat |
100 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26099462 |
taatggttcccttcgtaaagatcatgatcatgttttaaacatggtgttaagaaggtaattaattaattaacactaattacacaaacacaaacacaaatat |
26099363 |
T |
|
| Q |
101 |
catgatattcaattattgatgtgaatggtttaggaatgaaaaagctctagtacacaactacaaatacggattctcaggcttcgcagctcgtttatcaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26099362 |
catgatattcaattattgatgtgaatggtttaggaatgaaaaagctctagtacacaactacaaatacggattctcaggcttcgcagctcgtttatcaaaa |
26099263 |
T |
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| Q |
201 |
aatgaagcaaattcaattgctcaacaacctggagttgtatctgtg |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
26099262 |
aatgaagcaaattcaattgctcaacaacctggagttgtgtctgtg |
26099218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 122 - 245
Target Start/End: Complemental strand, 53434401 - 53434278
Alignment:
| Q |
122 |
tgaatggtttaggaatgaaaaagctctagtacacaactacaaatacggattctcaggcttcgcagctcgtttatcaaaaaatgaagcaaattcaattgct |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||| ||||| | ||||| |
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| T |
53434401 |
tgaatggtttaggaatgaaaaagctctagtacacaactataaatacggattctcaggcttcgcagcccgcttatcaaaaaatgaagtaaatttagttgct |
53434302 |
T |
|
| Q |
222 |
caacaacctggagttgtatctgtg |
245 |
Q |
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| T |
53434301 |
caacaacctggagttgtgtctgtg |
53434278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 116 - 245
Target Start/End: Original strand, 48370830 - 48370959
Alignment:
| Q |
116 |
ttgatgtgaatggtttaggaatgaaaaagctctagtacacaactacaaatacggattctcaggcttcgcagctcgtttatcaaaaaatgaagcaaattca |
215 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
48370830 |
ttgatgtgaattgtttaggaatgaaaaagctctagtacataactataagcacggattctcaggcttcgcagctcgtttatcgaaaaatgaagcagcctca |
48370929 |
T |
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| Q |
216 |
attgctcaacaacctggagttgtatctgtg |
245 |
Q |
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| T |
48370930 |
attgctcaacaacctggagttgtgtctgtg |
48370959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 117 - 244
Target Start/End: Complemental strand, 53426245 - 53426118
Alignment:
| Q |
117 |
tgatgtgaatggtttaggaatgaaaaagctctagtacacaactacaaatacggattctcaggcttcgcagctcgtttatcaaaaaatgaagcaaattcaa |
216 |
Q |
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|||||||||| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||| || |||||||||||||||| ||||||||| |||| |
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| T |
53426245 |
tgatgtgaatcatttaggaatgagaaagctctagtacataactacaaacacggattctcaggctttgcggctcgtttatcaaaaagtgaagcaaactcaa |
53426146 |
T |
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| Q |
217 |
ttgctcaacaacctggagttgtatctgt |
244 |
Q |
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| T |
53426145 |
ttgctcaacaacctggagttgtgtctgt |
53426118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 238
Target Start/End: Complemental strand, 53321943 - 53321822
Alignment:
| Q |
117 |
tgatgtgaatggtttaggaatgaaaaagctctagtacacaactacaaatacggattctcaggcttcgcagctcgtttatcaaaaaatgaagcaaattcaa |
216 |
Q |
| |
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|||||||||| |||||||| || | ||| || |||||||||||||| | ||||||||||| || ||||||| | |||||||| |||||||||| |||| |
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| T |
53321943 |
tgatgtgaattatttaggaacgagagggctttaatacacaactacaaacatggattctcaggttttgcagctcttctatcaaaacatgaagcaaactcaa |
53321844 |
T |
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| Q |
217 |
ttgctcaacaacctggagttgt |
238 |
Q |
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| T |
53321843 |
tagctcaacaacctggagttgt |
53321822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 238
Target Start/End: Complemental strand, 53310931 - 53310885
Alignment:
| Q |
192 |
ttatcaaaaaatgaagcaaattcaattgctcaacaacctggagttgt |
238 |
Q |
| |
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|||| ||||||||||||||| ||||||||||| |||| ||||||||| |
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| T |
53310931 |
ttattaaaaaatgaagcaaactcaattgctcatcaacatggagttgt |
53310885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 178
Target Start/End: Complemental strand, 53310978 - 53310932
Alignment:
| Q |
132 |
aggaatgaaaaagctctagtacacaactacaaatacggattctcagg |
178 |
Q |
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| T |
53310978 |
aggaatgaaaaggctctcgtacacaattacaaacacggattctcagg |
53310932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 53434523 - 53434471
Alignment:
| Q |
11 |
cttcgtaaagatcatgatcatgttttaaacatggtgttaagaaggtaattaat |
63 |
Q |
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|||||||||||||||| ||||||||| || |||||||||||||||||||| |
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| T |
53434523 |
cttcgtaaagatcatgcctatgttttaagcacagtgttaagaaggtaattaat |
53434471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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