View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_low_77 (Length: 250)
Name: NF5866_low_77
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_77 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 41547855 - 41547622
Alignment:
| Q |
1 |
catgggctatgatcttccgaacaaagaaaaaactatatatcacataaaacttcttcaacatggtcactttctgcatcatatggtataaaaagtgttacaa |
100 |
Q |
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| T |
41547855 |
catgggctatgatcttccgaacaaagaaaaaactatatatcacataaaacttcttcaacatggtcactttctgcatcatatggtataaaaagtgttacaa |
41547756 |
T |
|
| Q |
101 |
gagaaactgtacaatgattacgatttgagtagttaaaataaatacagagaaattagttgcaagggttttgataccttgtttcttatgatttccattgcca |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41547755 |
gagaaaatgtacaatgattacgatttgagtagttaaaataaatacagagaaattagttgcaagggttttgataccttgtttcttatgatttccattgcca |
41547656 |
T |
|
| Q |
201 |
ttttcctgaagagattagctgggccacatgacca |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
41547655 |
ttttcctgaagagattagctgggccacatgacca |
41547622 |
T |
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