View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_low_81 (Length: 246)
Name: NF5866_low_81
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_81 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 3 - 230
Target Start/End: Original strand, 505668 - 505901
Alignment:
| Q |
3 |
tgaatctgagctaactcacacatgttttattttcagcgtgagtaaacttagacaagtgtgnnnnnnnnagcgtgagttaacttac-------gggaatga |
95 |
Q |
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| T |
505668 |
tgaatctgagctaactcacacatattttattttcagcgtgagtaaactcagacaagtgtgttttttt-agcgtgagttaactcacaaaagatgagaatga |
505766 |
T |
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| Q |
96 |
gcaaaaccagaagggagaagaacaattatcaataaaagaatcaaaagcgcgattaagcctaaaaacacaaattaatatacaagattgtattttgttcata |
195 |
Q |
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| T |
505767 |
gcaaaaacagaagggagaagaacaattatcaataaaagaatcaaaagcgcgattaagcctaaaaacacaaattaatatacaagattgtattttgttcata |
505866 |
T |
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| Q |
196 |
catacccctaatccaacagccccaagaccaaaaac |
230 |
Q |
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| T |
505867 |
catacccctaatccaacagccccaagaccaaaaac |
505901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 125
Target Start/End: Complemental strand, 9828218 - 9828179
Alignment:
| Q |
86 |
acgggaatgagcaaaaccagaagggagaagaacaattatc |
125 |
Q |
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| T |
9828218 |
acgggaatgagcaaaaccagatgggagaagagcaattatc |
9828179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 23252920 - 23252960
Alignment:
| Q |
86 |
acgggaatgagcaaaaccagaagggagaagaacaattatca |
126 |
Q |
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| T |
23252920 |
acgggaatgagcaaaaccagatgggagaaaagcaattatca |
23252960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 28992496 - 28992536
Alignment:
| Q |
86 |
acgggaatgagcaaaaccagaagggagaagaacaattatca |
126 |
Q |
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| T |
28992496 |
acgggaatgagcaaaaccagatgggagaagagaaattatca |
28992536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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