View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5866_low_82 (Length: 246)

Name: NF5866_low_82
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5866_low_82
NF5866_low_82
[»] chr4 (1 HSPs)
chr4 (53-236)||(37791185-37791370)
[»] chr8 (1 HSPs)
chr8 (18-48)||(39478157-39478187)
[»] chr7 (1 HSPs)
chr7 (18-48)||(18249996-18250026)
[»] chr6 (1 HSPs)
chr6 (18-48)||(13312131-13312161)
[»] chr5 (2 HSPs)
chr5 (18-48)||(19716285-19716315)
chr5 (18-48)||(27450584-27450614)
[»] chr3 (3 HSPs)
chr3 (18-48)||(12710809-12710839)
chr3 (18-48)||(26049543-26049573)
chr3 (18-48)||(54432180-54432210)
[»] chr1 (3 HSPs)
chr1 (18-48)||(29677522-29677552)
chr1 (18-48)||(38061181-38061211)
chr1 (18-50)||(40159631-40159663)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 53 - 236
Target Start/End: Complemental strand, 37791370 - 37791185
Alignment:
Q  53 gaagaattgcgttgaaaaacttcaaaattgcacaaaaatcacaaggtttgagagaggaatgaagccaagtgcagatgtagaaataaaagtacgatccaac 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37791370 gaagaattgcgttgaaaaacttcaaaattgcacaaaaatcacaaggtttgagagaggaatgaagccaagtgcagatgtagaaataaaagtacgatccaac 37791271  T
Q  153 tattctagtgtatatatagaatcatttgggagataactccataaacacaacgagc--gagataactcccgaaccgtttcagttctt 236  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  37791270 tattctagtatatatatagaatcatttgggagataactccataaacacaacgagcaagagataactcccgaaccgtttcagttctt 37791185  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 39478157 - 39478187
Alignment:
Q  18 attttcgagttggttcggttcattgccagcc 48  Q
    |||||||||||||||||||||||||||||||    
T  39478157 attttcgagttggttcggttcattgccagcc 39478187  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 18250026 - 18249996
Alignment:
Q  18 attttcgagttggttcggttcattgccagcc 48  Q
    |||||||||||||||||||||||||||||||    
T  18250026 attttcgagttggttcggttcattgccagcc 18249996  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 13312131 - 13312161
Alignment:
Q  18 attttcgagttggttcggttcattgccagcc 48  Q
    |||||||||||||||||||||||||||||||    
T  13312131 attttcgagttggttcggttcattgccagcc 13312161  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 19716285 - 19716315
Alignment:
Q  18 attttcgagttggttcggttcattgccagcc 48  Q
    |||||||||||||||||||||||||||||||    
T  19716285 attttcgagttggttcggttcattgccagcc 19716315  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 27450614 - 27450584
Alignment:
Q  18 attttcgagttggttcggttcattgccagcc 48  Q
    |||||||||||||||||||||||||||||||    
T  27450614 attttcgagttggttcggttcattgccagcc 27450584  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 12710809 - 12710839
Alignment:
Q  18 attttcgagttggttcggttcattgccagcc 48  Q
    |||||||||||||||||||||||||||||||    
T  12710809 attttcgagttggttcggttcattgccagcc 12710839  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 26049573 - 26049543
Alignment:
Q  18 attttcgagttggttcggttcattgccagcc 48  Q
    |||||||||||||||||||||||||||||||    
T  26049573 attttcgagttggttcggttcattgccagcc 26049543  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 54432210 - 54432180
Alignment:
Q  18 attttcgagttggttcggttcattgccagcc 48  Q
    |||||||||||||||||||||||||||||||    
T  54432210 attttcgagttggttcggttcattgccagcc 54432180  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 29677552 - 29677522
Alignment:
Q  18 attttcgagttggttcggttcattgccagcc 48  Q
    |||||||||||||||||||||||||||||||    
T  29677552 attttcgagttggttcggttcattgccagcc 29677522  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 38061211 - 38061181
Alignment:
Q  18 attttcgagttggttcggttcattgccagcc 48  Q
    |||||||||||||||||||||||||||||||    
T  38061211 attttcgagttggttcggttcattgccagcc 38061181  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 40159663 - 40159631
Alignment:
Q  18 attttcgagttggttcggttcattgccagccta 50  Q
    |||||||||||||||||||||||||||| ||||    
T  40159663 attttcgagttggttcggttcattgccacccta 40159631  T

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