View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5866_low_83 (Length: 246)

Name: NF5866_low_83
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5866_low_83
NF5866_low_83
[»] chr5 (13 HSPs)
chr5 (1-229)||(3207700-3207928)
chr5 (1-229)||(3201726-3201954)
chr5 (1-229)||(3215636-3215864)
chr5 (22-223)||(3219148-3219349)
chr5 (1-212)||(3179024-3179235)
chr5 (1-212)||(3239605-3239816)
chr5 (28-110)||(3224185-3224267)
chr5 (6-85)||(3225685-3225764)
chr5 (6-85)||(3230933-3231012)
chr5 (33-85)||(3220700-3220752)
chr5 (153-229)||(3230789-3230865)
chr5 (138-229)||(3220556-3220647)
chr5 (153-229)||(3225541-3225617)
[»] chr4 (1 HSPs)
chr4 (1-79)||(42446001-42446079)
[»] chr2 (2 HSPs)
chr2 (35-87)||(18605173-18605225)
chr2 (35-83)||(19388462-19388510)
[»] chr1 (4 HSPs)
chr1 (35-87)||(139415-139467)
chr1 (35-87)||(164815-164867)
chr1 (35-87)||(18214753-18214805)
chr1 (50-82)||(46215258-46215290)
[»] chr6 (1 HSPs)
chr6 (35-87)||(19823555-19823607)


Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 3207928 - 3207700
Alignment:
Q  1 atcttagtggcattgctgctttgttgaaaaactctcatccagattggtctccagctgctataaaatctgcaatcatgacaactgctaatcaggttaatct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3207928 atcttagtggcattgctgctttgttgaaaaactctcatccagattggtctccagctgctataaaatccgcaatcatgacaactgctaatcaggttaatct 3207829  T
Q  101 tcaaggtaagcctattttggaccaaagaattctaccagctgatgtatttgccactggtgctggacatgtcaacccttcaaaagcaaatgatccgggactt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3207828 tcaaggtaagcctattttggaccaaagaattctaccagctgatgtatttgccactggtgctggacatgtcaacccttcaaaagcaaatgatccgggactt 3207729  T
Q  201 gtttatgatattgaaacaaatgattatgt 229  Q
    |||||||||||||||||||||||||||||    
T  3207728 gtttatgatattgaaacaaatgattatgt 3207700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 3201954 - 3201726
Alignment:
Q  1 atcttagtggcattgctgctttgttgaaaaactctcatccagattggtctccagctgctataaaatctgcaatcatgacaactgctaatcaggttaatct 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||| ||||||||    
T  3201954 atcttagtggcattgctgctttgttgaaaaactcgcatccagattggtcaccagcagctataaaatcagcaatcatgacgactgctaatcatgttaatct 3201855  T
Q  101 tcaaggtaagcctattttggaccaaagaattctaccagctgatgtatttgccactggtgctggacatgtcaacccttcaaaagcaaatgatccgggactt 200  Q
     || |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  3201854 ccatggtaagcctattttggaccaaaggcttctaccagctgatgtatttgccactggtgctggacatgttaacccttcaaaagcaaacgatccgggactt 3201755  T
Q  201 gtttatgatattgaaacaaatgattatgt 229  Q
    |||||||||||||||||||||||||||||    
T  3201754 gtttatgatattgaaacaaatgattatgt 3201726  T

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Target: chr5; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 3215864 - 3215636
Alignment:
Q  1 atcttagtggcattgctgctttgttgaaaaactctcatccagattggtctccagctgctataaaatctgcaatcatgacaactgctaatcaggttaatct 100  Q
    |||| ||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| || | ||||||||    
T  3215864 atctcagtggaattgctgctctgttgaaaaactctcatccagattggtctcccgctgctataaaatcagcaatcatgacaactgcttatgaagttaatct 3215765  T
Q  101 tcaaggtaagcctattttggaccaaagaattctaccagctgatgtatttgccactggtgctggacatgtcaacccttcaaaagcaaatgatccgggactt 200  Q
    |||||| ||  ||||||||||||||||| ||  |||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||    
T  3215764 tcaaggaaaagctattttggaccaaagacttaaaccagctgatttatttgccactggtgctggacatgtcaacccttcgaaagcaaacgatccaggactt 3215665  T
Q  201 gtttatgatattgaaacaaatgattatgt 229  Q
    ||||||||||||||| |||||||||||||    
T  3215664 gtttatgatattgaaccaaatgattatgt 3215636  T

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Target: chr5; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 3219349 - 3219148
Alignment:
Q  22 tgttgaaaaactctcatccagattggtctccagctgctataaaatctgcaatcatgacaactgctaatcaggttaatcttcaaggtaagcctattttgga 121  Q
    |||||||||| |||||||||||| ||||||| |||||||||||||| |||||||||||||||||| || || ||||||||||||| ||  ||||||| ||    
T  3219349 tgttgaaaaattctcatccagatcggtctcccgctgctataaaatcagcaatcatgacaactgcttatgagtttaatcttcaaggaaaagctattttaga 3219250  T
Q  122 ccaaagaattctaccagctgatgtatttgccactggtgctggacatgtcaacccttcaaaagcaaatgatccgggacttgtttatgatattgaaacaaat 221  Q
    ||||||  ||  |||||||||| |||||||||||||||||||| ||||||||| ||  |||||||| ||||| |||||||||||||| |||||| |||||    
T  3219249 ccaaaggcttaaaccagctgatttatttgccactggtgctggatatgtcaaccatttgaaagcaaacgatccaggacttgtttatgacattgaaccaaat 3219150  T
Q  222 ga 223  Q
    ||    
T  3219149 ga 3219148  T

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Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 3179024 - 3179235
Alignment:
Q  1 atcttagtggcattgctgctttgttgaaaaactctcatccagattggtctccagctgctataaaatctgcaatcatgacaactgctaatcaggttaatct 100  Q
    |||| |||||||||||||| ||| | ||||  |||||||| |||||||| |||||||| |||||||| |||||||||||||||||||||    | || ||    
T  3179024 atctcagtggcattgctgcattgatcaaaagttctcatcctgattggtcgccagctgcaataaaatcagcaatcatgacaactgctaatactctcaacct 3179123  T
Q  101 tcaaggtaagcctattttggaccaaagaattctaccagctgatgtatttgccactggtgctggacatgtcaacccttcaaaagcaaatgatccgggactt 200  Q
        || |  ||||| ||||| |||||| ||  ||| |||||||| ||||| |||||||| |||||||| || |||   ||||| |||||||| || |||    
T  3179124 cggcgggattcctatattggatcaaagactttcacctgctgatgtttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctggtctt 3179223  T
Q  201 gtttatgatatt 212  Q
    ||||||||||||    
T  3179224 gtttatgatatt 3179235  T

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Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 3239816 - 3239605
Alignment:
Q  1 atcttagtggcattgctgctttgttgaaaaactctcatccagattggtctccagctgctataaaatctgcaatcatgacaactgctaatcaggttaatct 100  Q
    |||| |||||||||||||| ||| | ||||  |||||||| |||||||| |||||||| |||||||| |||||||||||||||||||||    | || ||    
T  3239816 atctcagtggcattgctgcattgatcaaaagttctcatcctgattggtcgccagctgcaataaaatcagcaatcatgacaactgctaatactctcaacct 3239717  T
Q  101 tcaaggtaagcctattttggaccaaagaattctaccagctgatgtatttgccactggtgctggacatgtcaacccttcaaaagcaaatgatccgggactt 200  Q
        || |  ||||| ||||| |||||| ||  ||| |||||||| ||||| |||||||| |||||||| || |||   ||||| |||||||| || |||    
T  3239716 cggcgggattcctatattggatcaaagactttcacctgctgatgtttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctggtctt 3239617  T
Q  201 gtttatgatatt 212  Q
    ||||||||||||    
T  3239616 gtttatgatatt 3239605  T

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Target: chr5; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 3224267 - 3224185
Alignment:
Q  28 aaaactctcatccagattggtctccagctgctataaaatctgcaatcatgacaactgctaatcaggttaatcttcaaggtaag 110  Q
    |||||| |||||||||||||||||   ||||||||||||| |||||||||||||||||  || ||||||||||||||||||||    
T  3224267 aaaactatcatccagattggtctctgtctgctataaaatcggcaatcatgacaactgcatatgaggttaatcttcaaggtaag 3224185  T

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Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 3225764 - 3225685
Alignment:
Q  6 agtggcattgctgctttgttgaaaaactctcatccagattggtctccagctgctataaaatctgcaatcatgacaactgc 85  Q
    ||||| |||||||| ||| | ||||  |||||||| |||||||| ||||| ||||||||||| |||||||||||||||||    
T  3225764 agtggtattgctgcattgatcaaaagttctcatcctgattggtcaccagccgctataaaatcggcaatcatgacaactgc 3225685  T

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Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 85
Target Start/End: Complemental strand, 3231012 - 3230933
Alignment:
Q  6 agtggcattgctgctttgttgaaaaactctcatccagattggtctccagctgctataaaatctgcaatcatgacaactgc 85  Q
    ||||| |||||||| ||| | ||||  ||||| || |||||||| ||||| ||||||||||| |||||||||||||||||    
T  3231012 agtggtattgctgcattgatcaaaagttctcaccctgattggtcgccagccgctataaaatcagcaatcatgacaactgc 3230933  T

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Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 3220752 - 3220700
Alignment:
Q  33 tctcatccagattggtctccagctgctataaaatctgcaatcatgacaactgc 85  Q
    ||||| || |||||||| ||||| ||||||||||| |||||||||||||||||    
T  3220752 tctcaccctgattggtcaccagccgctataaaatcagcaatcatgacaactgc 3220700  T

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Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 3230865 - 3230789
Alignment:
Q  153 actggtgctggacatgtcaacccttcaaaagcaaatgatccgggacttgtttatgatattgaaacaaatgattatgt 229  Q
    |||||||| |||||||| || ||||  ||||| |||||||| || |||||||||||||||||| || | ||||||||    
T  3230865 actggtgcaggacatgttaatccttttaaagctaatgatcctggtcttgtttatgatattgaaccagaagattatgt 3230789  T

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Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 3220647 - 3220556
Alignment:
Q  138 gctgatgtatttgccactggtgctggacatgtcaacccttcaaaagcaaatgatccgggacttgtttatgatattgaaacaaatgattatgt 229  Q
    |||||| | ||||| |||||||| |||||||| || |||   ||||| |||||||| || |||||||||||||||||| || | ||||||||    
T  3220647 gctgatatttttgctactggtgcaggacatgttaatcctgttaaagctaatgatcctggtcttgtttatgatattgaaccagaagattatgt 3220556  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 229
Target Start/End: Complemental strand, 3225617 - 3225541
Alignment:
Q  153 actggtgctggacatgtcaacccttcaaaagcaaatgatccgggacttgtttatgatattgaaacaaatgattatgt 229  Q
    |||||||| |||||||| || |||   ||||| |||||||| || |||||||||||||||||| || | ||||||||    
T  3225617 actggtgcaggacatgttaatcctgttaaagctaatgatcctggtcttgtttatgatattgaaccagaagattatgt 3225541  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 42446001 - 42446079
Alignment:
Q  1 atcttagtggcattgctgctttgttgaaaaactctcatccagattggtctccagctgctataaaatctgcaatcatgac 79  Q
    |||||||||||||||| |||||| | |||| ||||||||| |||||||| ||||| || ||||||||||| || |||||    
T  42446001 atcttagtggcattgcggctttgctcaaaagctctcatcctgattggtcaccagcagccataaaatctgccataatgac 42446079  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 18605173 - 18605225
Alignment:
Q  35 tcatccagattggtctccagctgctataaaatctgcaatcatgacaactgcta 87  Q
    ||||||||||||||| || || ||||| |||||||| ||||||||||||||||    
T  18605173 tcatccagattggtcacctgcagctatcaaatctgctatcatgacaactgcta 18605225  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 19388462 - 19388510
Alignment:
Q  35 tcatccagattggtctccagctgctataaaatctgcaatcatgacaact 83  Q
    ||||||||||||||| || || ||||| |||||||| ||||||||||||    
T  19388462 tcatccagattggtcacctgcagctatcaaatctgctatcatgacaact 19388510  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 139467 - 139415
Alignment:
Q  35 tcatccagattggtctccagctgctataaaatctgcaatcatgacaactgcta 87  Q
    ||||||||||||||| || || ||||||||||| || ||||||||||||||||    
T  139467 tcatccagattggtcacctgcagctataaaatccgctatcatgacaactgcta 139415  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 164867 - 164815
Alignment:
Q  35 tcatccagattggtctccagctgctataaaatctgcaatcatgacaactgcta 87  Q
    ||||||||||||||| || ||  |||||||||| || ||||||||||||||||    
T  164867 tcatccagattggtcacctgcatctataaaatccgctatcatgacaactgcta 164815  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 18214753 - 18214805
Alignment:
Q  35 tcatccagattggtctccagctgctataaaatctgcaatcatgacaactgcta 87  Q
    |||||| |||||||| || || |||||||||||||| ||||||||||| ||||    
T  18214753 tcatcctgattggtcacctgcagctataaaatctgctatcatgacaacagcta 18214805  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 82
Target Start/End: Original strand, 46215258 - 46215290
Alignment:
Q  50 tccagctgctataaaatctgcaatcatgacaac 82  Q
    |||||||||||||||||| ||||||||||||||    
T  46215258 tccagctgctataaaatcagcaatcatgacaac 46215290  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 19823555 - 19823607
Alignment:
Q  35 tcatccagattggtctccagctgctataaaatctgcaatcatgacaactgcta 87  Q
    ||||||| ||||||| || || ||||| |||||||| ||||||||||||||||    
T  19823555 tcatccaaattggtcacctgcagctatcaaatctgccatcatgacaactgcta 19823607  T

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