View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_low_86 (Length: 245)
Name: NF5866_low_86
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_86 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 4 - 229
Target Start/End: Complemental strand, 47550994 - 47550771
Alignment:
| Q |
4 |
ccgcggcagggaatttgttgttcctatcttgttccatcctgctgcggtgttcttctgcacactttcaactgaagaaataatgcctcccaacccattattg |
103 |
Q |
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| T |
47550994 |
ccgcggcagggaatttgttgtttctatcttgttcgatcctgctgcggtgttcttctgcacactttcaactgaagaaataatgcctcccaacccattattg |
47550895 |
T |
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| Q |
104 |
tctcctctcatatcatgactggacattggattattaaaagttggttgaaaaaagaaattatttcgattttcttgcacaggcacatatgcatcagctgata |
203 |
Q |
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| T |
47550894 |
tctcctctcatatcatgactggacattggattattaaaagttggttgaaaaaagaaattatttcgattttcctgcacaggcacatatgcatcagctgata |
47550795 |
T |
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| Q |
204 |
actcagaagggcttccatcaagtaat |
229 |
Q |
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|||| |||||||||||||||||||| |
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| T |
47550794 |
actc--aagggcttccatcaagtaat |
47550771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 47529129 - 47528911
Alignment:
| Q |
8 |
ggcagggaatttgttgttcctatcttgttccatcctgctgcggtgttcttctgcacactttcaactgaagaaataatgcctcccaacccattattgtctc |
107 |
Q |
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||||||||||||||| |||||||||||||| ||||||| |||||||| || |||||||| ||||||||||||||| |||| | | ||||||| ||| |
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| T |
47529129 |
ggcagggaatttgttcgtcctatcttgttcccacctgctggggtgttct---gcccactttcagctgaagaaataatgcttcccgatctattattggctc |
47529033 |
T |
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| Q |
108 |
ctctcatatcatgactggacattggattattaaaagttggttgaaaaaagaaattatttcgattttcttgcacaggcacatatgcatcagctgataactc |
207 |
Q |
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|||||||||||||||||||||| ||| |||| |||||||||||| ||||||| ||| |||||||||||||||| |||||||||||||| | || |
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| T |
47529032 |
ctctcatatcatgactggacataagatgattaggtaagggttgaaaaaagtgattatttggatcttcttgcacaggcacagatgcatcagctgatgattc |
47528933 |
T |
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| Q |
208 |
agaagggcttccatcaagtaat |
229 |
Q |
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|||||| |||||||||| |||| |
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| T |
47528932 |
agaaggacttccatcaaataat |
47528911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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