View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_low_89 (Length: 237)
Name: NF5866_low_89
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_89 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 15 - 233
Target Start/End: Original strand, 37783410 - 37783628
Alignment:
| Q |
15 |
accttaaacatatattattcatatgttatcttttttaaccttgatatgcatgaaaattgatttgatataatttcgttgtatacagtgtctttggagcagt |
114 |
Q |
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| T |
37783410 |
accttaaacatatattattcatatgttatcttttttaaccttgatatgcatgaaaattgatttgatataatttggttgtatacagtgtctttggagcagt |
37783509 |
T |
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| Q |
115 |
gttgattgtatgtggcatatatgcagtgctttggagtaagaacaaagaaatgaaaaagaagaataaatcatcatctttagaaatcaacatggagaataaa |
214 |
Q |
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| T |
37783510 |
gttgattgtatgtggcatatatgcagtactttggagtaagaacaaagaaatgaaaaagaagaataaatcatcatctttagaaatcaacatggagaataaa |
37783609 |
T |
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| Q |
215 |
cctgagttcgttataccca |
233 |
Q |
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| T |
37783610 |
cctgagttcgttataccca |
37783628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 71 - 201
Target Start/End: Original strand, 37808709 - 37808839
Alignment:
| Q |
71 |
ttgatttgatataatttcgttgtatacagtgtctttggagcagtgttgattgtatgtggcatatatgcagtgctttggagtaagaacaaagaaatgaaaa |
170 |
Q |
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| T |
37808709 |
ttgatttgatatagtttggttgtatatagtgtttttggagcagtattgattgtgtgtggcctatatgcggtgctttggagtaagggcatagaaatgaaaa |
37808808 |
T |
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| Q |
171 |
agaagaataaatcatcatctttagaaatcaa |
201 |
Q |
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| T |
37808809 |
aaaagactcaattattatcattaaaaatcaa |
37808839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 37793003 - 37793067
Alignment:
| Q |
105 |
ttggagcagtgttgattgtatgtggcatatatgcagtgctttggagtaagaacaaagaaatgaaa |
169 |
Q |
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| T |
37793003 |
ttggagcagtgctgattgtgtgcggcctatatgtggtgctttggagtaagagcaaagaaatgaaa |
37793067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 37804086 - 37804150
Alignment:
| Q |
105 |
ttggagcagtgttgattgtatgtggcatatatgcagtgctttggagtaagaacaaagaaatgaaa |
169 |
Q |
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| T |
37804086 |
ttggagcagtgttgatcgtgtgcggcctatatatagtgctgtggagtaagaacaaagaaatgaaa |
37804150 |
T |
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