View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_low_9 (Length: 618)
Name: NF5866_low_9
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 501; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 91 - 599
Target Start/End: Complemental strand, 6006255 - 6005747
Alignment:
| Q |
91 |
ataccttgtttgaattagtttctcctgatgactttgtcaatagtggtatgaaactatgaattgtgcatttctttcctttattctcacttcacttaatgtc |
190 |
Q |
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| T |
6006255 |
ataccttgtttgaattagtttctcctgatgactttgtcaatagtggtatgaaactatgaattgtgcatttctttcctttattttcacttcacttaatgtc |
6006156 |
T |
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| Q |
191 |
ttcaggaagctttacaagcaaagggacttagagatgatacaacctgtgttgttgtcgatatattacctcaggagaagccacctgctcctgtaccacatca |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6006155 |
ttcaggaagctttacaagcaaagggacttagagatgatacaacctgtgttgttgtcgatatattacctcaggagaagccacctgctcctgtaccacatca |
6006056 |
T |
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| Q |
291 |
aaagaagccagtaaaaggaatgctcaaggccatgtttcgtaaaaagtcttcggaatcatcatctattgacaaagaatacatggagccagatgtggtagtg |
390 |
Q |
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| T |
6006055 |
aaagaagccagtaaaaggaatgctcaaggccatgtttcgtaaaaagtcttcggaatcatcatctattgacaaagaatacatggagccagatgtggtagtg |
6005956 |
T |
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| Q |
391 |
gagctatatgaggaaggctctgctatgctttcagagaggtttaattttgtaatatctgttgtcgaagttagcagtactctagtttttctcttgacaatag |
490 |
Q |
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| T |
6005955 |
gagctgtatgaggaaggctctgctatgctttcagagaggtttaattttgtaatatctgttgtcgaagttagcagtactctagtttttctcttgacaatag |
6005856 |
T |
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| Q |
491 |
aatgcttgtctaaaatgcaggttagaaacaaaatatccactatgcaacatgttcaagttgttcatatgtgcagtatgtcaagtagaaataaaacccggag |
590 |
Q |
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| T |
6005855 |
aatgcttgtctaaaatgcaggttagaaacaaaatatccactatgcaacatgttcaagttgttcatatgtgcagtatgtcaagtagaaataaaacccggag |
6005756 |
T |
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| Q |
591 |
agggtattt |
599 |
Q |
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| T |
6005755 |
agggtattt |
6005747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 6006366 - 6006284
Alignment:
| Q |
11 |
cacagattgtaaaagtgagataaatgttccgcttttgaatcattttataattttgtggggctgttttgatgttgggtataata |
93 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6006366 |
cacagattgtaaaagtgagataaatgttcctcttttgaatcattttataattttgtggggctgttttgatgttgggtataata |
6006284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 5e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 189 - 432
Target Start/End: Original strand, 46737501 - 46737747
Alignment:
| Q |
189 |
tcttcaggaagctttacaagcaaagggacttagagatgatacaacctgtgttgttgtcgatatattacctcaggagaagccacctgctcctgtaccacat |
288 |
Q |
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|||||||||| |||| ||||||||||| || |||||||| |||||||| || || |||||||||||||| |||||||| |||||| || |||||| | |
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| T |
46737501 |
tcttcaggaatctttgcaagcaaagggcctcagagatgacacaacctgcgtcgtggtcgatatattaccccaggagaaaccacctacttctgtacgaaca |
46737600 |
T |
|
| Q |
289 |
caaaagaagccagtaaaaggaatgctcaaggccatgtttcgtaaaaagtcttcgga---atcatcatctattgacaaagaatacatggagccagatgtgg |
385 |
Q |
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| T |
46737601 |
caaaagaaaccggtaaaaggaatgttgaaggccattttccgcaaaaagtcctccgagtcatcttcatatgttgaaaaagaatacgttgagccagatatgg |
46737700 |
T |
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| Q |
386 |
tagtggagctatatgaggaaggctctgctatgctttcagagaggttt |
432 |
Q |
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|| ||| ||||| |||||||| ||||| |||||||||| |||||| |
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| T |
46737701 |
tacgggaactatacgaggaaggatctgccttgctttcagaaaggttt |
46737747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 496 - 599
Target Start/End: Original strand, 46737809 - 46737912
Alignment:
| Q |
496 |
ttgtctaaaatgcaggttagaaacaaaatatccactatgcaacatgttcaagttgttcatatgtgcagtatgtcaagtagaaataaaacccggagagggt |
595 |
Q |
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|||||| || |||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| || ||||| || |||||| |
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| T |
46737809 |
ttgtctgaactgcaggtttgaaacaaaatatccactctgcaacatgttcaagttgttcatgtgtgcagtgtgtcaagtagagattaaacctggggagggt |
46737908 |
T |
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| Q |
596 |
attt |
599 |
Q |
| |
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|||| |
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| T |
46737909 |
attt |
46737912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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