View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_low_93 (Length: 228)
Name: NF5866_low_93
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_93 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 43883221 - 43883010
Alignment:
| Q |
18 |
agaaagttgaaaaatctaaacattttaa-aagttaatgattacttagtttgacacctatatagtaaattatcactttaagatatttgaatcattgatgag |
116 |
Q |
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| T |
43883221 |
agaaagttgaaaaatctaaacattttaagaagttaatgattacttagtttgacacctatatagtaaattatcactttaagatatttgaatcattgatgag |
43883122 |
T |
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| Q |
117 |
aaccatcagttgatatttgaatctatttataatttgttatgtatgtgaattaaatactaaccgatgattcattaactacagataaattttcctttagagg |
216 |
Q |
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| T |
43883121 |
aaccatcagttgatatttgaatctatttataatttgttatgtatgcgaattaaatactaaccgatgattcattaactacagatatattttcctttagagg |
43883022 |
T |
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| Q |
217 |
agttaaattcat |
228 |
Q |
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|||||||||||| |
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| T |
43883021 |
agttaaattcat |
43883010 |
T |
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