View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5866_low_99 (Length: 203)
Name: NF5866_low_99
Description: NF5866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5866_low_99 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 6070586 - 6070777
Alignment:
| Q |
1 |
tcctttattttcctctctgcttcttctgctgtcacaccaactagctcagaccaatttcttcttgtaggattatttctccctgaaattaattatttaatct |
100 |
Q |
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| T |
6070586 |
tcctttattttcctctctgcttcttctgctgtcacaccaactagctcagaccaatttcttcttgttggattatttctccctgaaattaattatttaatct |
6070685 |
T |
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| Q |
101 |
tatttcaaatcatttttatatttatgagaaagccaaaatatatattcaatataactatttaaagcaaaagattgttagttcccgtgatgatg |
192 |
Q |
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| T |
6070686 |
tatttcaaatcatttttatatttatgagaaagccaaaatatatattcaatatcactatttaaatcaaaagattgttagttcccgtgacgatg |
6070777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 6055832 - 6055738
Alignment:
| Q |
1 |
tcctttattttcctctctgcttcttctgctgtcacaccaactagctcagaccaatttcttcttgtaggattatttctccctgaaattaattattt |
95 |
Q |
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| T |
6055832 |
tcctttattttcctctctgcttcttctgctgtcacaccaactagctcagaccaatttcttcttgttggattatttctccctgaaattaattattt |
6055738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 6085662 - 6085742
Alignment:
| Q |
1 |
tcctttattttcctctctgcttcttctgctgtcacaccaactagctcagaccaatttcttcttgtaggattatttctccct |
81 |
Q |
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| T |
6085662 |
tcctttatttttctctctgcttcttctgcagtgacaccaactagctcaggccaacttgtttttgtagggttatttgtccct |
6085742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 6055740 - 6055693
Alignment:
| Q |
114 |
ttttatatttatgagaaagccaaaatatatattcaatataactattta |
161 |
Q |
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| T |
6055740 |
ttttatattaatgagaaagccaaaatatatgttcaatatcactattta |
6055693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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