View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5867-Insertion-2 (Length: 572)
Name: NF5867-Insertion-2
Description: NF5867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5867-Insertion-2 |
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| [»] scaffold0085 (1 HSPs) |
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Alignment Details
Target: scaffold0085 (Bit Score: 552; Significance: 0; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 9 - 572
Target Start/End: Original strand, 42652 - 43215
Alignment:
| Q |
9 |
aattatttatcaaccaaaaggactagctctctgacaccattcttactacttcatcagaacatgaaaactacaatagactgatcactgctaagtttttaac |
108 |
Q |
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| T |
42652 |
aattatttatcaaccaaaaggactagctctctgacaccattcttactacttcatcagaacatgaaaactacaatagactgatcactgctaagtttttaac |
42751 |
T |
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| Q |
109 |
agtatcatttacaaatattaatgttccatcttaattaatgaccaaatttggcaaagttgacaaaccaaacttcagaactatgaattaacttttgattaaa |
208 |
Q |
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| T |
42752 |
agtatcatttacaaatattaatgttccatcttaattaatgaccaaatttggcaaagttgacaaaccaaacttcagaactatgaattaacttttgattaaa |
42851 |
T |
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| Q |
209 |
gaaaggaatttacagtagattatcactgctctcaattgctgaaaacattgtactcttcaattcattgatatcattaagtaatctctcattctcccagttt |
308 |
Q |
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| T |
42852 |
gaaaggaatttacagtagattatcactgctcccaattgctgaaaacattgtactcttcaattcattgatatcattaagtaatctctcattctcccagttt |
42951 |
T |
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| Q |
309 |
ttgctctggatttcagcttctaattctgcagtagggggtttggggaagtgcataaaaaggttaggctgcagcattaacttctttaacttctatatatatg |
408 |
Q |
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| T |
42952 |
ttgctctgaatttcagcttctaattctgcagtagggggtttggggaagtgcataaaaaggttaggttgcagcattaacttctttaacttctatatatatg |
43051 |
T |
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| Q |
409 |
ttaatccttatttggtttggtgcaataataatataaacacagaagtaataactagcatgaaaaacctacttccttgtatacatatattattacctgagtt |
508 |
Q |
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| T |
43052 |
ttaatccttatttggtttggtgcaataataatataaacacagaagtaataactagcatgaaaaacctacttccttgtatacatatattattacctgagtt |
43151 |
T |
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| Q |
509 |
tgaattatgaagatcttcaagaatttcctctacaaatgccaaaaccgaatttttcaaaacacaa |
572 |
Q |
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| T |
43152 |
tgaattatgaagatcttcaagaatttcctctacaaatgccaaaaccgaatttttcaaaacacaa |
43215 |
T |
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