View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5867-Insertion-3 (Length: 570)
Name: NF5867-Insertion-3
Description: NF5867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5867-Insertion-3 |
 | |
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| [»] chr2 (7 HSPs) |
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| [»] scaffold0288 (2 HSPs) |
| | |
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| [»] scaffold0477 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 501; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 9 - 570
Target Start/End: Original strand, 34448530 - 34449087
Alignment:
| Q |
9 |
cgatttccttgcgaatgaagttataagcctcttctcctgacatgtcatattgcttcatgcaacattccactgcagaagcaacatgcactctttcttgctc |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34448530 |
cgatttccttgcgaatgaagttataagcctcttctcctgacatgtcatattgcttcatgcaacattccactgcagaagcaacatgcactctttcttgctc |
34448629 |
T |
|
| Q |
109 |
aaactataaataaagcaaatacaaaaatatgtatacttcagttttgttagatactttcgatgtactttcatatgcagatacaaaatatgcagtaccttat |
208 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34448630 |
aaactataaataaagcaaatacaaaaacatgtatacttcagttttgtaagatactttcgatgtactttcatatgcagatacaaaatatgcagtaccttat |
34448729 |
T |
|
| Q |
209 |
gtgaggatatgtcatccgcgagtctaccatgagccgatatagcatcgatgattgttggatagctgaaaatccaatcgagaatctcgtcgtttgaaaattc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34448730 |
gtgaggatatgtcatccgcgagtctaccatgagccgatatagcatcgatgattgttggatagttgaaaatccaatcgagaatctcgtcgtttgaaaattc |
34448829 |
T |
|
| Q |
309 |
tccaagtccaataaaagataatatttgaagtgggtatgaagaagatatagatccattagccttgtattcatcatatgttggaatatatccttcactgcac |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34448830 |
tccaagtccaataaaagataatatttgaagcgggtatgaagaagatatagatccattagccttgtattcatcatatgttggaatatatccttcactgcac |
34448929 |
T |
|
| Q |
409 |
cattttgattcaacaaagtaggatcgtgccaatttgtaaaactgtaaattaatgaaaatattgatcaactaattcactgaaagagcaaaattaagtaaaa |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || |
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|
| T |
34448930 |
cattttgattcaacaaagtaggatcgtgccaatttgtaaaactgtaaattaatgaaaatattgatcaactaattcactgatagagcaaaattaagcacaa |
34449029 |
T |
|
| Q |
509 |
ttggtaatttaaaaatatatatatgaatttgtaagcctacattttgtttgacatattgtata |
570 |
Q |
| |
|
|||||||||| || ||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
34449030 |
ttggtaattttgaa----gtatatgaatttttaagcctacattttgtttgacatattgtata |
34449087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 201 - 468
Target Start/End: Original strand, 34485308 - 34485575
Alignment:
| Q |
201 |
taccttatgtgaggatatgtcatccgcgagtctaccatgagccgatatagcatcgatgattgttggatagctgaaaatccaatcgagaatctcgtcgttt |
300 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| ||| ||| |||| ||| ||||||||| |||| | || || |||||||| | | ||| | |||| |
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|
| T |
34485308 |
taccttatgtgaggatatgtcatctgctagtctgccaatagctgatacagcctcgatgatttttgggtcactaaagatccaatcaaacaactctttgttt |
34485407 |
T |
|
| Q |
301 |
gaaaattctccaagtccaataaaagataatatttgaagtgggtatgaagaagatatagatccattagccttgtattcatcatatgttggaatatatcctt |
400 |
Q |
| |
|
||||||||||||| || | |||| |||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
34485408 |
gaaaattctccaaaccctagaaaacttaatatttgaagtgggagtgtagaagatataattccattagccttgtattcatcatatgttggaataaatcctt |
34485507 |
T |
|
| Q |
401 |
cactgcaccattttgattcaacaaagtaggatcgtgccaatttgtaaaactgtaaattaatgaaaata |
468 |
Q |
| |
|
|| |||||||||||| |||||| ||||||||| |||||| ||| ||||||||||||||||| |||||| |
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|
| T |
34485508 |
cattgcaccattttgtttcaaccaagtaggattgtgccagtttataaaactgtaaattaatcaaaata |
34485575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 199 - 473
Target Start/End: Original strand, 34473990 - 34474264
Alignment:
| Q |
199 |
agtaccttatgtgaggatatgtcatccgcgagtctaccatgagccgatatagcatcgatgattgttggatagctgaaaatccaatcgagaatctcgtcgt |
298 |
Q |
| |
|
||||| ||||| ||||||| |||||||||||||| ||| ||| |||| ||||| | ||||||||| | ||| ||| |||||| || | ||| || | |
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|
| T |
34473990 |
agtactttatgcgaggatacatcatccgcgagtctgccaatagctgatacagcattaacgattgttggttcactggaaagccaatcaagcaactcttcat |
34474089 |
T |
|
| Q |
299 |
ttgaaaattctccaagtccaataaaagataatatttgaagtgggtatgaagaagatatagatccattagccttgtattcatcatatgttggaatatatcc |
398 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||| ||||||| || |||||||||| ||||||||| || ||||||||||||||||| ||| ||| |
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|
| T |
34474090 |
ttgaaaattctccaagtccaacgaaagatattattgaaagtgggattgtagaagatataagtccattagctttatattcatcatatgttggtataattcc |
34474189 |
T |
|
| Q |
399 |
ttcactgcaccattttgattcaacaaagtaggatcgtgccaatttgtaaaactgtaaattaatgaaaatattgat |
473 |
Q |
| |
|
|||| ||| |||||| | ||| || ||||||||| |||||||||| || |||||||||||||| ||||||||||| |
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|
| T |
34474190 |
ttcattgccccatttagtttccaccaagtaggattgtgccaatttatagaactgtaaattaatcaaaatattgat |
34474264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 359 - 476
Target Start/End: Original strand, 34460206 - 34460323
Alignment:
| Q |
359 |
atccattagccttgtattcatcatatgttggaatatatccttcactgcaccattttgattcaacaaagtaggatcgtgccaatttgtaaaactgtaaatt |
458 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| | |||||||||||| |||||| || |||| |||||||| ||| |||||||| ||| |
|
|
| T |
34460206 |
atccattaaccttgtattcatcatatgttggaatatatcctgctttgcaccattttgcttcaaccaaataggctcgtgccactttataaaactgaaaaca |
34460305 |
T |
|
| Q |
459 |
aatgaaaatattgatcaa |
476 |
Q |
| |
|
||| |||||||||||||| |
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|
| T |
34460306 |
aataaaaatattgatcaa |
34460323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 14 - 122
Target Start/End: Original strand, 34459768 - 34459876
Alignment:
| Q |
14 |
tccttgcgaatgaagttataagcctcttctcctgacatgtcatattgcttcatgcaacattccactgcagaagcaacatgcactctttcttgctcaaact |
113 |
Q |
| |
|
|||||| |||||| ||||||||||||||| ||| ||||||||||||||||||||||| || |||||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
34459768 |
tccttgagaatgagtttataagcctcttcttgtgatatgtcatattgcttcatgcaacaatcaactgcagaggcaacatgcaccctttcgtgctcaaact |
34459867 |
T |
|
| Q |
114 |
ataaataaa |
122 |
Q |
| |
|
|||||||| |
|
|
| T |
34459868 |
gtaaataaa |
34459876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 34473822 - 34473906
Alignment:
| Q |
29 |
ttataagcctcttctcctgacatgtcatattgcttcatgcaacattccactgcagaagcaacatgcactctttcttgctcaaact |
113 |
Q |
| |
|
||||| ||||||||| |||||||| |||||||||||||||||||| ||||| | |||||||||||| |||| |||||||||| |
|
|
| T |
34473822 |
ttataggcctcttcttgtgacatgttgtattgcttcatgcaacattcaactgctgcagcaacatgcaccctttgctgctcaaact |
34473906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 34483935 - 34483977
Alignment:
| Q |
83 |
gaagcaacatgcactctttcttgctcaaactataaataaagca |
125 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34483935 |
gaagcaacatgcactctttgctgctcaaactataaataaagca |
34483977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 201 - 457
Target Start/End: Complemental strand, 6131418 - 6131161
Alignment:
| Q |
201 |
taccttatgtgaggatatgtcatccgcgagtctaccatgagccgatatagcatcgatgattgttggatagctgaaaatccaatcgagaatctcgtcgttt |
300 |
Q |
| |
|
|||||||||||||||| ||||||| | ||||||| || ||| | | ||||| |||||||||||| | ||||||||||||||| || | ||| | |||| |
|
|
| T |
6131418 |
taccttatgtgaggatttgtcatcggtgagtctagcaatagctgctgcagcattgatgattgttgggtcgctgaaaatccaatcaagtaactctttgttt |
6131319 |
T |
|
| Q |
301 |
gaaaattctccaagtccaataaaagataatat-ttgaagtgggtatgaagaagatatagatccattagccttgtattcatcatatgttggaatatatcct |
399 |
Q |
| |
|
|||||||||||||| |||| |||||||| || |||||||| | || |||||||||| ||||||||| |||||||||| || ||||||||| ||||| |
|
|
| T |
6131318 |
gaaaattctccaagaccaagaaaagatagtaagttgaagtgagagtgtagaagatataattccattagctttgtattcattgtaagttggaataaatcct |
6131219 |
T |
|
| Q |
400 |
tcactgcaccattttgattcaacaaagtaggatcgtgccaatttgtaaaactgtaaat |
457 |
Q |
| |
|
||| |||||||||||| |||||| ||||||||| ||||||||| ||||||||||||| |
|
|
| T |
6131218 |
tcattgcaccattttgcttcaaccaagtaggattttgccaatttataaaactgtaaat |
6131161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 6132230 - 6132153
Alignment:
| Q |
46 |
tgacatgtcatattgcttcatgcaacattccactgcagaagcaacatgcactctttcttgctcaaactataaataaag |
123 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||| |||| |
|
|
| T |
6132230 |
tgacatatcatattgcttcatgcaacattcaactgcagaagcaacatgcactctttgctgctcaaactgtaaacaaag |
6132153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 90
Target Start/End: Complemental strand, 6135884 - 6135842
Alignment:
| Q |
48 |
acatgtcatattgcttcatgcaacattccactgcagaagcaac |
90 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
6135884 |
acatgtcatattgcttcatgcaacattcaactgtagaagcaac |
6135842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 348 - 466
Target Start/End: Original strand, 16250 - 16367
Alignment:
| Q |
348 |
agaagatatagatccattagccttgtattcatcatatgttggaatatatccttcactgcaccattttgattcaacaaagtaggatcgtgccaatttgtaa |
447 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| |||| |||| || ||| |||| | ||||||||||||||||| || || ||| | ||||||| ||| |
|
|
| T |
16250 |
agaagatataagtccattaaccttgtattcattatatattggtatgaatc-ttcattccaccattttgattcaaccaaatatgattctaccaatttataa |
16348 |
T |
|
| Q |
448 |
aactgtaaattaatgaaaa |
466 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
16349 |
aactgtaaattaatcaaaa |
16367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 360 - 461
Target Start/End: Complemental strand, 15977 - 15877
Alignment:
| Q |
360 |
tccattagccttgtattcatcatatgttggaatatatccttcactgcaccattttgattcaac-aaagtaggatcgtgccaatttgtaaaactgtaaatt |
458 |
Q |
| |
|
||||||||| || |||||||||||||||| | || ||| |||| ||||||||||||||||||| ||| || ||||| |||| || ||||||||| |||| |
|
|
| T |
15977 |
tccattagcgttatattcatcatatgttgta-taaatc-ttcattgcaccattttgattcaacaaaaatacaatcgtaccaacttataaaactgtgaatt |
15880 |
T |
|
| Q |
459 |
aat |
461 |
Q |
| |
|
||| |
|
|
| T |
15879 |
aat |
15877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 1593287 - 1593371
Alignment:
| Q |
29 |
ttataagcctcttctcctgacatgtcatattgcttcatgcaacattccactgcagaagcaacatgcactctttcttgctcaaact |
113 |
Q |
| |
|
||||| || |||||| |||||||| ||||||||||||||||| || ||||| |||||||||||| | |||| ||||||||||| |
|
|
| T |
1593287 |
ttatatgcatcttctggtgacatgttgtattgcttcatgcaacactcaactgctgaagcaacatgctccctttgttgctcaaact |
1593371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 8063 - 8031
Alignment:
| Q |
201 |
taccttatgtgaggatatgtcatccgcgagtct |
233 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
8063 |
taccttatgtgaggatatatcatccgcgagtct |
8031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 4640053 - 4640085
Alignment:
| Q |
201 |
taccttatgtgaggatatgtcatccgcgagtct |
233 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |
|
|
| T |
4640053 |
taccttatgtgaggatatatcatccgcgagtct |
4640085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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