View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5867-Insertion-5 (Length: 150)
Name: NF5867-Insertion-5
Description: NF5867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5867-Insertion-5 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 131; Significance: 3e-68; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 131; E-Value: 3e-68
Query Start/End: Original strand, 8 - 150
Target Start/End: Original strand, 44640343 - 44640485
Alignment:
| Q |
8 |
accaatcacttcaacatctttacataaagtgttgatatgttctaaatgagttaataaaacaccacaaggaattggacatcccagaaacttatggccagag |
107 |
Q |
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| T |
44640343 |
accaatcacttcaacatctttacataaagtgttgatatgttctaaacgagttaataaaacaccacaaggaattggacatcccagaaacttatggccagag |
44640442 |
T |
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| Q |
108 |
atagttgtacttccgatgggcttcttgaaggtaatgcttggag |
150 |
Q |
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| T |
44640443 |
atagttatacttccaatgggcttcttgaaggtaatgcttggag |
44640485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 2e-56
Query Start/End: Original strand, 8 - 150
Target Start/End: Original strand, 44668656 - 44668798
Alignment:
| Q |
8 |
accaatcacttcaacatctttacataaagtgttgatatgttctaaatgagttaataaaacaccacaaggaattggacatcccagaaacttatggccagag |
107 |
Q |
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| T |
44668656 |
accaatcacttcaacatctttacataaagtgttgatatgttctaaacgagttaataaaacaccacaaggaattggacatcccaaaaacttatggcctgaa |
44668755 |
T |
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| Q |
108 |
atagttgtacttccgatgggcttcttgaaggtaatgcttggag |
150 |
Q |
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| T |
44668756 |
atggttatacttccaatggacttcttgaaggtaatgcttggag |
44668798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 63 - 150
Target Start/End: Original strand, 44660238 - 44660325
Alignment:
| Q |
63 |
aaaacaccacaaggaattggacatcccagaaacttatggccagagatagttgtacttccgatgggcttcttgaaggtaatgcttggag |
150 |
Q |
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| T |
44660238 |
aaaacaccacaaggtgatgggcatcccaaaaacttatggcctgaaattgttacactgtcgatgggtttcttgaagctaatccttggag |
44660325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 28; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 63 - 142
Target Start/End: Complemental strand, 29357572 - 29357493
Alignment:
| Q |
63 |
aaaacaccacaaggaattggacatcccagaaacttatggccagagatagttgtacttccgatgggcttcttgaaggtaat |
142 |
Q |
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| T |
29357572 |
aaaacaccacaaggaaatgggcatcccaaaaacttatgacctgaaatagttacactgtcgataggtttcttgaagctaat |
29357493 |
T |
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