View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5867_high_1 (Length: 576)
Name: NF5867_high_1
Description: NF5867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5867_high_1 |
 | |
|
| [»] scaffold0288 (2 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 478; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 48 - 557
Target Start/End: Complemental strand, 34449039 - 34448530
Alignment:
| Q |
48 |
aaattaccaattttacttaattttgctctttcagtgaattagttgatcaatattttcattaatttacagttttacaaattggcacgatcctactttgttg |
147 |
Q |
| |
|
|||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34449039 |
aaattaccaattgtgcttaattttgctctatcagtgaattagttgatcaatattttcattaatttacagttttacaaattggcacgatcctactttgttg |
34448940 |
T |
|
| Q |
148 |
aatcaaaatggtgcagtgaaggatatattccaacatatgatgaatacaaggctaatggatctatatcttcttcatacccacttcaaatattatcttttat |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
34448939 |
aatcaaaatggtgcagtgaaggatatattccaacatatgatgaatacaaggctaatggatctatatcttcttcatacccgcttcaaatattatcttttat |
34448840 |
T |
|
| Q |
248 |
tggacttggagaattttcaaacgacgagattctcgattggattttcagctatccaacaatcagcgatgctatatcggctcatggtagactcgcggatgac |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34448839 |
tggacttggagaattttcaaacgacgagattctcgattggattttcaactatccaacaatcatcgatgctatatcggctcatggtagactcgcggatgac |
34448740 |
T |
|
| Q |
348 |
atatcctcacataaggtactgcatattttgtatctgcatatgaaagtacatcgaaagtatctaacaaaactgaagtatacatatttttgtatttgcttta |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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|
| T |
34448739 |
atatcctcacataaggtactgcatattttgtatctgcatatgaaagtacatcgaaagtatcttacaaaactgaagtatacatgtttttgtatttgcttta |
34448640 |
T |
|
| Q |
448 |
tttatagtttgagcaagaaagagtgcatgttgcttctgcagtggaatgttgcatgaagcaatatgacatgtcaggagaagaggcttataacttcattcgc |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34448639 |
tttatagtttgagcaagaaagagtgcatgttgcttctgcagtggaatgttgcatgaagcaatatgacatgtcaggagaagaggcttataacttcattcgc |
34448540 |
T |
|
| Q |
548 |
aaggaaatcg |
557 |
Q |
| |
|
|||||||||| |
|
|
| T |
34448539 |
aaggaaatcg |
34448530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 98 - 365
Target Start/End: Complemental strand, 34485575 - 34485308
Alignment:
| Q |
98 |
tattttcattaatttacagttttacaaattggcacgatcctactttgttgaatcaaaatggtgcagtgaaggatatattccaacatatgatgaatacaag |
197 |
Q |
| |
|
|||||| ||||||||||||||||| ||| |||||| ||||||||| |||||| |||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
34485575 |
tattttgattaatttacagttttataaactggcacaatcctacttggttgaaacaaaatggtgcaatgaaggatttattccaacatatgatgaatacaag |
34485476 |
T |
|
| Q |
198 |
gctaatggatctatatcttcttcatacccacttcaaatattatcttttattggacttggagaattttcaaacgacgagattctcgattggattttcagct |
297 |
Q |
| |
|
||||||||| |||||||||| || |||||||||||||||| |||| | || ||||||||||||||||| | ||| | | |||||||| || || |
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|
| T |
34485475 |
gctaatggaattatatcttctacactcccacttcaaatattaagttttctagggtttggagaattttcaaacaaagagttgtttgattggatctttagtg |
34485376 |
T |
|
| Q |
298 |
atccaacaatcagcgatgctatatcggctcatggtagactcgcggatgacatatcctcacataaggta |
365 |
Q |
| |
|
| |||| ||||| ||| ||| |||| ||| ||| ||||| || |||||||||||||||||||||||| |
|
|
| T |
34485375 |
acccaaaaatcatcgaggctgtatcagctattggcagactagcagatgacatatcctcacataaggta |
34485308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 93 - 367
Target Start/End: Complemental strand, 34474264 - 34473990
Alignment:
| Q |
93 |
atcaatattttcattaatttacagttttacaaattggcacgatcctactttgttgaatcaaaatggtgcagtgaaggatatattccaacatatgatgaat |
192 |
Q |
| |
|
||||||||||| |||||||||||||| || |||||||||| ||||||||| || ||| | |||||| ||| ||||||| ||| |||||||||||||||| |
|
|
| T |
34474264 |
atcaatattttgattaatttacagttctataaattggcacaatcctacttggtggaaactaaatggggcaatgaaggaattataccaacatatgatgaat |
34474165 |
T |
|
| Q |
193 |
acaaggctaatggatctatatcttcttcatacccacttcaaatattatcttttattggacttggagaattttcaaacgacgagattctcgattggatttt |
292 |
Q |
| |
|
| || ||||||||| |||||||||| || ||||||| |||| ||||||| |||||||||||||||||||||| || ||| | || |||||| ||| |
|
|
| T |
34474164 |
ataaagctaatggacttatatcttctacaatcccactttcaataatatctttcgttggacttggagaattttcaaatgaagagttgcttgattggctttc |
34474065 |
T |
|
| Q |
293 |
cagctatccaacaatcagcgatgctatatcggctcatggtagactcgcggatgacatatcctcacataaggtact |
367 |
Q |
| |
|
||| | ||||||||| ||||| |||| ||| ||| |||||||||||||| ||||||| ||||| ||||| |
|
|
| T |
34474064 |
cagtgaaccaacaatcgttaatgctgtatcagctattggcagactcgcggatgatgtatcctcgcataaagtact |
34473990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 90 - 207
Target Start/End: Complemental strand, 34460323 - 34460206
Alignment:
| Q |
90 |
ttgatcaatattttcattaatttacagttttacaaattggcacgatcctactttgttgaatcaaaatggtgcagtgaaggatatattccaacatatgatg |
189 |
Q |
| |
|
|||||||||||||| ||| ||| |||||||| ||| |||||||| |||| || |||||| |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
34460323 |
ttgatcaatatttttatttgttttcagttttataaagtggcacgagcctatttggttgaagcaaaatggtgcaaagcaggatatattccaacatatgatg |
34460224 |
T |
|
| Q |
190 |
aatacaaggctaatggat |
207 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
34460223 |
aatacaaggttaatggat |
34460206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 444 - 552
Target Start/End: Complemental strand, 34459876 - 34459768
Alignment:
| Q |
444 |
tttatttatagtttgagcaagaaagagtgcatgttgcttctgcagtggaatgttgcatgaagcaatatgacatgtcaggagaagaggcttataacttcat |
543 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||||||||| |||||||| || ||||||||||||||||||||||| ||| ||||||||||||||| |||| |
|
|
| T |
34459876 |
tttatttacagtttgagcacgaaagggtgcatgttgcctctgcagttgattgttgcatgaagcaatatgacatatcacaagaagaggcttataaactcat |
34459777 |
T |
|
| Q |
544 |
tcgcaagga |
552 |
Q |
| |
|
|| |||||| |
|
|
| T |
34459776 |
tctcaagga |
34459768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 453 - 537
Target Start/End: Complemental strand, 34473906 - 34473822
Alignment:
| Q |
453 |
agtttgagcaagaaagagtgcatgttgcttctgcagtggaatgttgcatgaagcaatatgacatgtcaggagaagaggcttataa |
537 |
Q |
| |
|
|||||||||| |||| |||||||||||| | ||||| |||||||||||||||||||| |||||||| ||||||||| ||||| |
|
|
| T |
34473906 |
agtttgagcagcaaagggtgcatgttgctgcagcagttgaatgttgcatgaagcaatacaacatgtcacaagaagaggcctataa |
34473822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 483
Target Start/End: Complemental strand, 34483977 - 34483935
Alignment:
| Q |
441 |
tgctttatttatagtttgagcaagaaagagtgcatgttgcttc |
483 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34483977 |
tgctttatttatagtttgagcagcaaagagtgcatgttgcttc |
34483935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 109 - 365
Target Start/End: Original strand, 6131161 - 6131418
Alignment:
| Q |
109 |
atttacagttttacaaattggcacgatcctactttgttgaatcaaaatggtgcagtgaaggatatattccaacatatgatgaatacaaggctaatggatc |
208 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||| |||||| |||||||||||| |||||||| ||||||||| || |||||||||| ||||||||| |
|
|
| T |
6131161 |
atttacagttttataaattggcaaaatcctacttggttgaagcaaaatggtgcaatgaaggatttattccaacttacaatgaatacaaagctaatggaat |
6131260 |
T |
|
| Q |
209 |
tatatcttcttcatacccacttcaa-atattatcttttattggacttggagaattttcaaacgacgagattctcgattggattttcagctatccaacaat |
307 |
Q |
| |
|
|||||||||| || | |||||||| || |||||||| |||| |||||||||||||||||| | ||| | || ||||||||||||||| | |||||||| |
|
|
| T |
6131261 |
tatatcttctacactctcacttcaacttactatcttttcttggtcttggagaattttcaaacaaagagttacttgattggattttcagcgacccaacaat |
6131360 |
T |
|
| Q |
308 |
cagcgatgctatatcggctcatggtagactcgcggatgacatatcctcacataaggta |
365 |
Q |
| |
|
|| | ||||| | | ||| || ||||||| | ||||||| |||||||||||||||| |
|
|
| T |
6131361 |
catcaatgctgcagcagctattgctagactcaccgatgacaaatcctcacataaggta |
6131418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 443 - 520
Target Start/End: Original strand, 6132153 - 6132230
Alignment:
| Q |
443 |
ctttatttatagtttgagcaagaaagagtgcatgttgcttctgcagtggaatgttgcatgaagcaatatgacatgtca |
520 |
Q |
| |
|
|||| |||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
6132153 |
ctttgtttacagtttgagcagcaaagagtgcatgttgcttctgcagttgaatgttgcatgaagcaatatgatatgtca |
6132230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 476 - 518
Target Start/End: Original strand, 6135842 - 6135884
Alignment:
| Q |
476 |
gttgcttctgcagtggaatgttgcatgaagcaatatgacatgt |
518 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
6135842 |
gttgcttctacagttgaatgttgcatgaagcaatatgacatgt |
6135884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 100 - 218
Target Start/End: Complemental strand, 16367 - 16250
Alignment:
| Q |
100 |
ttttcattaatttacagttttacaaattggcacgatcctactttgttgaatcaaaatggtgcagtgaaggatatattccaacatatgatgaatacaaggc |
199 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| | ||| || || ||||||||||||||||| | |||| ||| || |||| |||| |||||||||||| |
|
|
| T |
16367 |
ttttgattaatttacagttttataaattggtagaatcatatttggttgaatcaaaatggtggaatgaa-gattcataccaatatataatgaatacaaggt |
16269 |
T |
|
| Q |
200 |
taatggatctatatcttct |
218 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
16268 |
taatggacttatatcttct |
16250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 105 - 206
Target Start/End: Original strand, 15877 - 15977
Alignment:
| Q |
105 |
attaatttacagttttacaaattggcacgatcctacttt-gttgaatcaaaatggtgcagtgaaggatatattccaacatatgatgaatacaaggctaat |
203 |
Q |
| |
|
||||||| ||||||||| || |||| ||||| || ||| ||||||||||||||||||| |||| ||| || | |||||||||||||||| || |||||| |
|
|
| T |
15877 |
attaattcacagttttataagttggtacgattgtatttttgttgaatcaaaatggtgcaatgaa-gattta-tacaacatatgatgaatataacgctaat |
15974 |
T |
|
| Q |
204 |
gga |
206 |
Q |
| |
|
||| |
|
|
| T |
15975 |
gga |
15977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 453 - 537
Target Start/End: Complemental strand, 1593371 - 1593287
Alignment:
| Q |
453 |
agtttgagcaagaaagagtgcatgttgcttctgcagtggaatgttgcatgaagcaatatgacatgtcaggagaagaggcttataa |
537 |
Q |
| |
|
||||||||||| |||| | |||||||||||| ||||| || ||||||||||||||||| |||||||| |||||| || ||||| |
|
|
| T |
1593371 |
agtttgagcaacaaagggagcatgttgcttcagcagttgagtgttgcatgaagcaatacaacatgtcaccagaagatgcatataa |
1593287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 333 - 365
Target Start/End: Original strand, 8031 - 8063
Alignment:
| Q |
333 |
agactcgcggatgacatatcctcacataaggta |
365 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
8031 |
agactcgcggatgatatatcctcacataaggta |
8063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 333 - 365
Target Start/End: Complemental strand, 4640085 - 4640053
Alignment:
| Q |
333 |
agactcgcggatgacatatcctcacataaggta |
365 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
4640085 |
agactcgcggatgatatatcctcacataaggta |
4640053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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