View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5867_high_7 (Length: 250)

Name: NF5867_high_7
Description: NF5867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5867_high_7
NF5867_high_7
[»] chr7 (7 HSPs)
chr7 (20-250)||(22534131-22534361)
chr7 (20-250)||(22525505-22525735)
chr7 (95-141)||(7327775-7327821)
chr7 (90-141)||(20456102-20456153)
chr7 (23-78)||(24391071-24391126)
chr7 (26-60)||(20414584-20414618)
chr7 (21-59)||(46769050-46769088)
[»] scaffold0128 (3 HSPs)
scaffold0128 (23-144)||(8199-8320)
scaffold0128 (40-141)||(25251-25352)
scaffold0128 (103-144)||(3740-3781)
[»] chr5 (1 HSPs)
chr5 (23-75)||(42297807-42297859)
[»] chr4 (2 HSPs)
chr4 (95-141)||(2910627-2910673)
chr4 (101-141)||(11982095-11982135)
[»] chr1 (1 HSPs)
chr1 (26-78)||(39379425-39379477)


Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 22534361 - 22534131
Alignment:
Q  20 tcaggaaaacttttaatagttctccaaacattatcacccaaggtaaagactctcacatcattaccttctgaatttaaggctacaaccttataggtgtcgg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22534361 tcaggaaaacttttaatagttctccaaacattatcacccaaggtaaagactctcacatcattaccttctgaatttaaggctacaaccttataggtgtcgg 22534262  T
Q  120 ttgaattatcataaccaaacacgaatggatgaaattcccaatcatcccaactgaaatcagttcttaatatatcggatattgttctcgtggcagggttcca 219  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  22534261 ttgaattatcataaccaaacacgaacggatgaaattcccaatcatcccaactgaaatcagttcttaatatatcagatattgttctcgtggcggggttcca 22534162  T
Q  220 gaagcggcacaatactcttcgaaatttagta 250  Q
    |||||||||||||||||||||||||||||||    
T  22534161 gaagcggcacaatactcttcgaaatttagta 22534131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 22525505 - 22525735
Alignment:
Q  20 tcaggaaaacttttaatagttctccaaacattatcacccaaggtaaagactctcacatcattaccttctgaatttaaggctacaaccttataggtgtcgg 119  Q
    ||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||  ||||||||||||||||||| |||||||||||||    
T  22525505 tcaggaaaagttttaatagttctccaaacattatcacccatggtaatgactctcacatcattaccgcctgaatttaaggctacaactttataggtgtcgg 22525604  T
Q  120 ttgaattatcataaccaaacacgaatggatgaaattcccaatcatcccaactgaaatcagttcttaatatatcggatattgttctcgtggcagggttcca 219  Q
    |||||||||||||||||||||| ||   || |||||| ||||||||  ||  |||||||||||| ||||||||||||||||||||||| || ||||| ||    
T  22525605 ttgaattatcataaccaaacacaaactcataaaattcgcaatcatcataatcgaaatcagttctcaatatatcggatattgttctcgtagcggggtttca 22525704  T
Q  220 gaagcggcacaatactcttcgaaatttagta 250  Q
    ||||||||| |||||| ||  ||||||||||    
T  22525705 gaagcggcataatacttttttaaatttagta 22525735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 7327821 - 7327775
Alignment:
Q  95 aaggctacaaccttataggtgtcggttgaattatcataaccaaacac 141  Q
    ||||||||||||||||| |||| ||||||||||||||||| ||||||    
T  7327821 aaggctacaaccttataagtgttggttgaattatcataacaaaacac 7327775  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 20456153 - 20456102
Alignment:
Q  90 aatttaaggctacaaccttataggtgtcggttgaattatcataaccaaacac 141  Q
    |||| ||||| ||||||||||| |||||||||||||||||| ||| ||||||    
T  20456153 aattcaaggccacaaccttatatgtgtcggttgaattatcaaaacaaaacac 20456102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 24391126 - 24391071
Alignment:
Q  23 ggaaaacttttaatagttctccaaacattatcacccaaggtaaagactctcacatc 78  Q
    |||||||||| |||| ||||||||| ||||||||||||  |||| |||||||||||    
T  24391126 ggaaaactttgaatatttctccaaatattatcacccaaactaaaaactctcacatc 24391071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 20414618 - 20414584
Alignment:
Q  26 aaacttttaatagttctccaaacattatcacccaa 60  Q
    |||||||||||| ||||||||||||||||||||||    
T  20414618 aaacttttaatacttctccaaacattatcacccaa 20414584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 46769088 - 46769050
Alignment:
Q  21 caggaaaacttttaatagttctccaaacattatcaccca 59  Q
    |||||||||||| |||||||||||||| |||||||||||    
T  46769088 caggaaaactttgaatagttctccaaatattatcaccca 46769050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 144
Target Start/End: Complemental strand, 8320 - 8199
Alignment:
Q  23 ggaaaacttttaatagttctccaaacattatcacccaaggtaaagactctcacatcattaccttctgaatttaaggctacaaccttataggtgtcggttg 122  Q
    ||||| |||| ||||  |||||||||||||||||||||  ||||||||||||  || |||||   |||| ||||||| ||||| ||||| ||||||||||    
T  8320 ggaaatctttgaatatatctccaaacattatcacccaaactaaagactctcatttcgttaccagttgaacttaaggccacaactttataagtgtcggttg 8221  T
Q  123 aattatcataaccaaacacgaa 144  Q
    || |||||||||||||||||||    
T  8220 aactatcataaccaaacacgaa 8199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 25352 - 25251
Alignment:
Q  40 tctccaaacattatcacccaaggtaaagactctcacatcattaccttctgaatttaaggctacaaccttataggtgtcggttgaattatcataaccaaac 139  Q
    |||||||||||||||||||||  |||||||| |||| || |||||   |||| |||| |  ||||||||||| ||||| ||| || | ||||||||||||    
T  25352 tctccaaacattatcacccaaactaaagactttcacttcgttaccagttgaacttaatgacacaaccttataagtgtcagttaaactctcataaccaaac 25253  T
Q  140 ac 141  Q
    ||    
T  25252 ac 25251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 3781 - 3740
Alignment:
Q  103 aaccttataggtgtcggttgaattatcataaccaaacacgaa 144  Q
    |||||||||  |||||||||||||||||||| ||||||||||    
T  3781 aaccttataaatgtcggttgaattatcataaacaaacacgaa 3740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 42297859 - 42297807
Alignment:
Q  23 ggaaaacttttaatagttctccaaacattatcacccaaggtaaagactctcac 75  Q
    |||||||||| |||||||||||||||||||||  ||||  |||||||||||||    
T  42297859 ggaaaactttgaatagttctccaaacattatcttccaaactaaagactctcac 42297807  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 2910673 - 2910627
Alignment:
Q  95 aaggctacaaccttataggtgtcggttgaattatcataaccaaacac 141  Q
    ||||| ||||||||||| ||||  |||||||||||||||||||||||    
T  2910673 aaggccacaaccttataagtgtgagttgaattatcataaccaaacac 2910627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 11982095 - 11982135
Alignment:
Q  101 acaaccttataggtgtcggttgaattatcataaccaaacac 141  Q
    ||||||||||| |||||| |||||||| |||||||||||||    
T  11982095 acaaccttataagtgtcgcttgaattaacataaccaaacac 11982135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 39379425 - 39379477
Alignment:
Q  26 aaacttttaatagttctccaaacattatcacccaaggtaaagactctcacatc 78  Q
    ||||||| |||| ||||||||||||||||||||||  | || |||||||||||    
T  39379425 aaactttcaatatttctccaaacattatcacccaaactgaaaactctcacatc 39379477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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