View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5867_high_8 (Length: 244)
Name: NF5867_high_8
Description: NF5867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5867_high_8 |
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| [»] scaffold0881 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 225
Target Start/End: Complemental strand, 10029003 - 10028792
Alignment:
| Q |
14 |
agatccaacacagaactgaagtaaaactattaagaaaaatttctgttatcgtgttttttagtgcttgtagaggatgttggaaaggtaaagcttatgattt |
113 |
Q |
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| T |
10029003 |
agatccaacacagaactgaagtaaaactattaagaaaaatttctgttatcgtgttttttagtgcttgtagaggatgttggaaaggtaaagcttatgattt |
10028904 |
T |
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| Q |
114 |
catagaaacctattcctataacattgcatgataatgatcactaaaaccattcatgcttaatgtatccaaaattgattcactttagcattttatcctaatt |
213 |
Q |
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| T |
10028903 |
catagaaacctattcctataacattgcatgataatgatcactaaaaccattcatgcttaatgtatccaaaattgattcactttagcattttatcctaatt |
10028804 |
T |
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| Q |
214 |
tatacttttttg |
225 |
Q |
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| T |
10028803 |
tatacttttttg |
10028792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 8707416 - 8707473
Alignment:
| Q |
91 |
tggaaaggtaaagcttatgatttcatagaaacctattcctataacattgcatgataat |
148 |
Q |
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| T |
8707416 |
tggaaaggtaaagcttatgatttcagagaaacctatttcaataacattgcatgataat |
8707473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0881 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0881
Description:
Target: scaffold0881; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 1229 - 1158
Alignment:
| Q |
77 |
cttgtagaggatgttggaaaggtaaagcttatgatttcatagaaacctattcctataacattgcatgataat |
148 |
Q |
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| T |
1229 |
cttgttgaggatgttggaaagataaagcttatgatttcagagaaacctattccaataacatagcatgataat |
1158 |
T |
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