View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5867_low_2 (Length: 563)
Name: NF5867_low_2
Description: NF5867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5867_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 309 - 547
Target Start/End: Original strand, 52216109 - 52216347
Alignment:
| Q |
309 |
ttacatgggcatcaatgaacaaaacacaagataataaattcaaaattgcaaagatgcaagagaagtctctgattctgattacttagaggcttttgaagac |
408 |
Q |
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| T |
52216109 |
ttacacgggcatcaatgaaacaaacacaagataataaattcaaaattacaaagatgcaagagaagtctctgattctgattacttagaggcttttgaagac |
52216208 |
T |
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| Q |
409 |
tcatcattttgttgtttttgttctctctctaatcttgaattaccatattgacatctttcctctatccaattaaaaatgtctttgaatacaatctccagat |
508 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
52216209 |
tcttcattttgttgtttttgttctctctctaatcttgaattaccatattgacatctttcctctatccaattaaaaatgtctttgaatacaatctccaaat |
52216308 |
T |
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| Q |
509 |
tttcaggtggctcaccatacaataaaccatgccacattc |
547 |
Q |
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| T |
52216309 |
tttcaggtggctcaccatacaataaaccatgccacattc |
52216347 |
T |
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