View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5867_low_4 (Length: 293)

Name: NF5867_low_4
Description: NF5867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5867_low_4
NF5867_low_4
[»] scaffold0085 (1 HSPs)
scaffold0085 (12-293)||(42656-42937)


Alignment Details
Target: scaffold0085 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 12 - 293
Target Start/End: Complemental strand, 42937 - 42656
Alignment:
Q  12 agagattacttaatgatatcaatgaattgaagagtacaatgttttcagcaattgagagcagtgataatctactgtaaattcctttctttaatcaaaagtt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  42937 agagattacttaatgatatcaatgaattgaagagtacaatgttttcagcaattgggagcagtgataatctactgtaaattcctttctttaatcaaaagtt 42838  T
Q  112 aattcatagttctgaagtttggtttgtcaactttgccaaatttggtcattaattaagatggaacattaatatttgtaaatgatactgttaaaaacttagc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42837 aattcatagttctgaagtttggtttgtcaactttgccaaatttggtcattaattaagatggaacattaatatttgtaaatgatactgttaaaaacttagc 42738  T
Q  212 agtgatcagtctattgtagttttcatgttctgatgaagtagtaagaatggtgtcagagagctagtccttttggttgataaat 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42737 agtgatcagtctattgtagttttcatgttctgatgaagtagtaagaatggtgtcagagagctagtccttttggttgataaat 42656  T

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