View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5867_low_6 (Length: 274)
Name: NF5867_low_6
Description: NF5867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5867_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 50532407 - 50532669
Alignment:
| Q |
1 |
aattgttccctaaattattaaaacttattaaaaatccatgacttattcccatccatctccgtcaaattagtacctactggttaatgttgtatgattctga |
100 |
Q |
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| T |
50532407 |
aattgttccctaaattattaaaacttattaaaaatccatgacttattcccatccatctccgtcaaattagtacctactggttaatgttgtatgattctga |
50532506 |
T |
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| Q |
101 |
tttaccagtttaatgaattctagttttctggtttaatgttatatgaattctgatttgcataaggttttgttgttgaattaagcactactgcaagcagcta |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50532507 |
tttaccagtttaatgaattatagttttctggtttaatgttatatgaattctgatttgcataaggttttgttgttgaattaagcactactgcaagcagcta |
50532606 |
T |
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| Q |
201 |
gaatcaaccgtgagtggttgagctcccactcatgcaccatgttcccatactcgtgattttcat |
263 |
Q |
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| T |
50532607 |
gaatcaaccgtgagtggttgagctcccactcatgcaccatgttcccatactcgtgattttcat |
50532669 |
T |
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