View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5867_low_7 (Length: 250)
Name: NF5867_low_7
Description: NF5867
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5867_low_7 |
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| [»] chr7 (7 HSPs) |
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| [»] scaffold0128 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 22534361 - 22534131
Alignment:
| Q |
20 |
tcaggaaaacttttaatagttctccaaacattatcacccaaggtaaagactctcacatcattaccttctgaatttaaggctacaaccttataggtgtcgg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22534361 |
tcaggaaaacttttaatagttctccaaacattatcacccaaggtaaagactctcacatcattaccttctgaatttaaggctacaaccttataggtgtcgg |
22534262 |
T |
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| Q |
120 |
ttgaattatcataaccaaacacgaatggatgaaattcccaatcatcccaactgaaatcagttcttaatatatcggatattgttctcgtggcagggttcca |
219 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
22534261 |
ttgaattatcataaccaaacacgaacggatgaaattcccaatcatcccaactgaaatcagttcttaatatatcagatattgttctcgtggcggggttcca |
22534162 |
T |
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| Q |
220 |
gaagcggcacaatactcttcgaaatttagta |
250 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
22534161 |
gaagcggcacaatactcttcgaaatttagta |
22534131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 22525505 - 22525735
Alignment:
| Q |
20 |
tcaggaaaacttttaatagttctccaaacattatcacccaaggtaaagactctcacatcattaccttctgaatttaaggctacaaccttataggtgtcgg |
119 |
Q |
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||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
22525505 |
tcaggaaaagttttaatagttctccaaacattatcacccatggtaatgactctcacatcattaccgcctgaatttaaggctacaactttataggtgtcgg |
22525604 |
T |
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| Q |
120 |
ttgaattatcataaccaaacacgaatggatgaaattcccaatcatcccaactgaaatcagttcttaatatatcggatattgttctcgtggcagggttcca |
219 |
Q |
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|||||||||||||||||||||| || || |||||| |||||||| || |||||||||||| ||||||||||||||||||||||| || ||||| || |
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| T |
22525605 |
ttgaattatcataaccaaacacaaactcataaaattcgcaatcatcataatcgaaatcagttctcaatatatcggatattgttctcgtagcggggtttca |
22525704 |
T |
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| Q |
220 |
gaagcggcacaatactcttcgaaatttagta |
250 |
Q |
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||||||||| |||||| || |||||||||| |
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| T |
22525705 |
gaagcggcataatacttttttaaatttagta |
22525735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 7327821 - 7327775
Alignment:
| Q |
95 |
aaggctacaaccttataggtgtcggttgaattatcataaccaaacac |
141 |
Q |
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||||||||||||||||| |||| ||||||||||||||||| |||||| |
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| T |
7327821 |
aaggctacaaccttataagtgttggttgaattatcataacaaaacac |
7327775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 141
Target Start/End: Complemental strand, 20456153 - 20456102
Alignment:
| Q |
90 |
aatttaaggctacaaccttataggtgtcggttgaattatcataaccaaacac |
141 |
Q |
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|||| ||||| ||||||||||| |||||||||||||||||| ||| |||||| |
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| T |
20456153 |
aattcaaggccacaaccttatatgtgtcggttgaattatcaaaacaaaacac |
20456102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 78
Target Start/End: Complemental strand, 24391126 - 24391071
Alignment:
| Q |
23 |
ggaaaacttttaatagttctccaaacattatcacccaaggtaaagactctcacatc |
78 |
Q |
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|||||||||| |||| ||||||||| |||||||||||| |||| ||||||||||| |
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| T |
24391126 |
ggaaaactttgaatatttctccaaatattatcacccaaactaaaaactctcacatc |
24391071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 20414618 - 20414584
Alignment:
| Q |
26 |
aaacttttaatagttctccaaacattatcacccaa |
60 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
20414618 |
aaacttttaatacttctccaaacattatcacccaa |
20414584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 46769088 - 46769050
Alignment:
| Q |
21 |
caggaaaacttttaatagttctccaaacattatcaccca |
59 |
Q |
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|||||||||||| |||||||||||||| ||||||||||| |
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| T |
46769088 |
caggaaaactttgaatagttctccaaatattatcaccca |
46769050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 144
Target Start/End: Complemental strand, 8320 - 8199
Alignment:
| Q |
23 |
ggaaaacttttaatagttctccaaacattatcacccaaggtaaagactctcacatcattaccttctgaatttaaggctacaaccttataggtgtcggttg |
122 |
Q |
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||||| |||| |||| ||||||||||||||||||||| |||||||||||| || ||||| |||| ||||||| ||||| ||||| |||||||||| |
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| T |
8320 |
ggaaatctttgaatatatctccaaacattatcacccaaactaaagactctcatttcgttaccagttgaacttaaggccacaactttataagtgtcggttg |
8221 |
T |
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| Q |
123 |
aattatcataaccaaacacgaa |
144 |
Q |
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|| ||||||||||||||||||| |
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| T |
8220 |
aactatcataaccaaacacgaa |
8199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 141
Target Start/End: Complemental strand, 25352 - 25251
Alignment:
| Q |
40 |
tctccaaacattatcacccaaggtaaagactctcacatcattaccttctgaatttaaggctacaaccttataggtgtcggttgaattatcataaccaaac |
139 |
Q |
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||||||||||||||||||||| |||||||| |||| || ||||| |||| |||| | ||||||||||| ||||| ||| || | |||||||||||| |
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| T |
25352 |
tctccaaacattatcacccaaactaaagactttcacttcgttaccagttgaacttaatgacacaaccttataagtgtcagttaaactctcataaccaaac |
25253 |
T |
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| Q |
140 |
ac |
141 |
Q |
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|| |
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| T |
25252 |
ac |
25251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 3781 - 3740
Alignment:
| Q |
103 |
aaccttataggtgtcggttgaattatcataaccaaacacgaa |
144 |
Q |
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||||||||| |||||||||||||||||||| |||||||||| |
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| T |
3781 |
aaccttataaatgtcggttgaattatcataaacaaacacgaa |
3740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 42297859 - 42297807
Alignment:
| Q |
23 |
ggaaaacttttaatagttctccaaacattatcacccaaggtaaagactctcac |
75 |
Q |
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|||||||||| ||||||||||||||||||||| |||| ||||||||||||| |
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| T |
42297859 |
ggaaaactttgaatagttctccaaacattatcttccaaactaaagactctcac |
42297807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 2910673 - 2910627
Alignment:
| Q |
95 |
aaggctacaaccttataggtgtcggttgaattatcataaccaaacac |
141 |
Q |
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||||| ||||||||||| |||| ||||||||||||||||||||||| |
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| T |
2910673 |
aaggccacaaccttataagtgtgagttgaattatcataaccaaacac |
2910627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 11982095 - 11982135
Alignment:
| Q |
101 |
acaaccttataggtgtcggttgaattatcataaccaaacac |
141 |
Q |
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||||||||||| |||||| |||||||| ||||||||||||| |
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| T |
11982095 |
acaaccttataagtgtcgcttgaattaacataaccaaacac |
11982135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 39379425 - 39379477
Alignment:
| Q |
26 |
aaacttttaatagttctccaaacattatcacccaaggtaaagactctcacatc |
78 |
Q |
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||||||| |||| |||||||||||||||||||||| | || ||||||||||| |
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| T |
39379425 |
aaactttcaatatttctccaaacattatcacccaaactgaaaactctcacatc |
39379477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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