View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5868-Insertion-12 (Length: 168)
Name: NF5868-Insertion-12
Description: NF5868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5868-Insertion-12 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 6e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 6e-82
Query Start/End: Original strand, 7 - 168
Target Start/End: Complemental strand, 38893150 - 38892989
Alignment:
| Q |
7 |
catcaacatggtaatatatgcgtcccagcaacttggtaacaagggatatgcagaacagatcataggcatccgtaaagaatcccattccagctatgatgat |
106 |
Q |
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| T |
38893150 |
catcaacatggtaatatatgcgtcccagcaacttggtaacaagggatatgcagaacagatcataggcatcagtaaagaatcccattccagcaatgatgat |
38893051 |
T |
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| Q |
107 |
tgctgtgaagtgataccattgcgttttcgccacatcaagtgcatttagcacctgaatttgct |
168 |
Q |
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| T |
38893050 |
tgctgtgaagtgataccattgcgttttcgccacatcaagtgcatttagcacctgaatttgct |
38892989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 9e-50
Query Start/End: Original strand, 7 - 166
Target Start/End: Complemental strand, 38883958 - 38883799
Alignment:
| Q |
7 |
catcaacatggtaatatatgcgtcccagcaacttggtaacaagggatatgcagaacagatcataggcatccgtaaagaatcccattccagctatgatgat |
106 |
Q |
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| T |
38883958 |
catcaacgtggtagtatatgcgaccgagcaactttgtaacaagggatacacagaacagatcataggcatctgtaaagaatcccataccagctatgatgat |
38883859 |
T |
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| Q |
107 |
tgctgtgaagtgataccattgcgttttcgccacatcaagtgcatttagcacctgaatttg |
166 |
Q |
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| T |
38883858 |
tgcagtgaaatggtaccattgtgttttagccacatcaagcgcatttagcacctgaatttg |
38883799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 2e-29; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 7 - 160
Target Start/End: Original strand, 30620928 - 30621081
Alignment:
| Q |
7 |
catcaacatggtaatatatgcgtcccagcaacttggtaacaagggatatgcagaacagatcataggcatccgtaaagaatcccattccagctatgatgat |
106 |
Q |
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| T |
30620928 |
catcgacatggtagtaaatgcgaccgagtagctttgtgacaagggatatgcagaatagatcgtatgcatcggtgaagaagcccattccagctatgacaat |
30621027 |
T |
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| Q |
107 |
tgctgtgaagtgataccattgcgttttcgccacatcaagtgcatttagcacctg |
160 |
Q |
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| T |
30621028 |
tgctgtgaaatggtaccattgtgttttcgctacatctagtgcatttagcacctg |
30621081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 35 - 157
Target Start/End: Complemental strand, 16223312 - 16223190
Alignment:
| Q |
35 |
caacttggtaacaagggatatgcagaacagatcataggcatccgtaaagaatcccattccagctatgatgattgctgtgaagtgataccattgcgttttc |
134 |
Q |
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| T |
16223312 |
caactttgtgacaagggaaatgcagaaaagatcatatgcatcagtgaagaatcccattccagcaatcacaattgtagtgaagtgatacaattgtgtcttg |
16223213 |
T |
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| Q |
135 |
gccacatcaagtgcatttagcac |
157 |
Q |
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| T |
16223212 |
gccacatcaagtgcatttagcac |
16223190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 33 - 159
Target Start/End: Complemental strand, 33115062 - 33114936
Alignment:
| Q |
33 |
agcaacttggtaacaagggatatgcagaacagatcataggcatccgtaaagaatcccattccagctatgatgattgctgtgaagtgataccattgcgttt |
132 |
Q |
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| T |
33115062 |
agcaatttggtaacaagggaaatgcagaagagatcataggaatcagtgaaaaaacccattccagcaatgacaattgcagtaaaatgataccactgtgtct |
33114963 |
T |
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| Q |
133 |
tcgccacatcaagtgcatttagcacct |
159 |
Q |
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| T |
33114962 |
tggctacatcaagtgcattaagcacct |
33114936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 157
Target Start/End: Complemental strand, 16183922 - 16183800
Alignment:
| Q |
35 |
caacttggtaacaagggatatgcagaacagatcataggcatccgtaaagaatcccattccagctatgatgattgctgtgaagtgataccattgcgttttc |
134 |
Q |
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| T |
16183922 |
caactttgtgacaagggaaatgcagaaaagatcatatgcatcagtgaagaatcccattccagctatcacaattgtagtgaaatggtacaattgcgtcttt |
16183823 |
T |
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| Q |
135 |
gccacatcaagtgcatttagcac |
157 |
Q |
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| T |
16183822 |
gcgacatcgagtgcattaagcac |
16183800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 35 - 154
Target Start/End: Original strand, 16175440 - 16175559
Alignment:
| Q |
35 |
caacttggtaacaagggatatgcagaacagatcataggcatccgtaaagaatcccattccagctatgatgattgctgtgaagtgataccattgcgttttc |
134 |
Q |
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| T |
16175440 |
caactttgtaacaagagaaatgcagaaaagatcataagcatcagtgaagaaacccattccagctatcacaattgtagtgaaatggtacaattgtgtcttt |
16175539 |
T |
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| Q |
135 |
gccacatcaagtgcatttag |
154 |
Q |
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| T |
16175540 |
gccacatctagtgcatttag |
16175559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 45 - 157
Target Start/End: Complemental strand, 33109012 - 33108900
Alignment:
| Q |
45 |
acaagggatatgcagaacagatcataggcatccgtaaagaatcccattccagctatgatgattgctgtgaagtgataccattgcgttttcgccacatcaa |
144 |
Q |
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| T |
33109012 |
acaagggaaatgcaaaagagatcataggcatcagtgaaaaaacccattccagcaatcacaattgctgtgaaatggtacatttgtgtcttcgccacatcga |
33108913 |
T |
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| Q |
145 |
gtgcatttagcac |
157 |
Q |
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| T |
33108912 |
gtgcattaagcac |
33108900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 97
Target Start/End: Original strand, 9700035 - 9700078
Alignment:
| Q |
54 |
atgcagaacagatcataggcatccgtaaagaatcccattccagc |
97 |
Q |
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| T |
9700035 |
atgcagaacagatcataggcatcagtgaagaatcccatgccagc |
9700078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.0000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.0000000000009
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 37316137 - 37316274
Alignment:
| Q |
17 |
gtaatatatgcgtcccagcaacttggtaacaagggatatgcagaacagatcataggcatccgtaaagaatcccattccagctatgatgattgctgtgaag |
116 |
Q |
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| T |
37316137 |
gtaatatattcttccaagtaacttggtaacatttggtatgcagaaaaggtcatatgcatctgtgaagaatcccataccagcaattatgatggctgtgaaa |
37316236 |
T |
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| Q |
117 |
tgataccattgcgttttcgccacatcaagtgcatttag |
154 |
Q |
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| T |
37316237 |
tggtaccattgtgttttggctgcatcaagggcagttag |
37316274 |
T |
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