View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5868-Insertion-5 (Length: 582)
Name: NF5868-Insertion-5
Description: NF5868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5868-Insertion-5 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 273 - 582
Target Start/End: Original strand, 48512331 - 48512636
Alignment:
| Q |
273 |
aatagccgaaaaaagagaagctaggtgaacgagttgcagcgttacaacaacttgtttcaccctttggcaaggtaaattagatatattttccagtgttatt |
372 |
Q |
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| T |
48512331 |
aatagccgaaaaaagagaagctaggtgaacgaattgcagcgttacaacaacttgtttcaccctttggcaaggtaaattagatatattttccagtgttatt |
48512430 |
T |
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| Q |
373 |
aggttattgtttgggaatttagtttttgaaaattgtaaattgaaattgcatgtgcagactgatacagcttcggtgcttcacgaggctactggttacataa |
472 |
Q |
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| T |
48512431 |
aaattattgtttgggaatttagtttttgaaaattgtaaattgaaattgcatgtgcagactgatacagcttcggtgcttcacgaggctactggttacataa |
48512530 |
T |
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| Q |
473 |
gattcttacatgatcaagttcaggttctgtgctctccatacctgcaaccttcacaagttcaatttcaaaatcaccctgtgagtcctatctatctctcatt |
572 |
Q |
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| T |
48512531 |
gattcttacatgatcaagttcaggttctgtgctctccatacttgcaaccttcacaagttcaatttcaaaatcaccctgtgagtc----ctatctctcatt |
48512626 |
T |
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| Q |
573 |
ctaaatctca |
582 |
Q |
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| T |
48512627 |
ctaaatctca |
48512636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 48512067 - 48512253
Alignment:
| Q |
9 |
acaagaacttgggacaaaggcaggtgttggagggcagaaaggtcctaaaaagaccaaaggagacaaccccacctcaactggacatgcaaaggtaaacnnn |
108 |
Q |
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| T |
48512067 |
acaagaacttgggacaaaggcaggtgttggagggcagaaaggtcctaaaaagaccaaaggagacaaccccacctcaactggacatgcaaaggtaaacata |
48512166 |
T |
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| Q |
109 |
nnnntcaactatgaatatgtgtttgcatgtctctctcatcaacacaacaatattcttaaacaaagatgacaagtccttttctatatt |
195 |
Q |
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| T |
48512167 |
aaaatcaactatgaatatgtgtttgcatgtctctctcatcaacacaacaatattcttaaacaaagatgacaagtccttttctatatt |
48512253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 281 - 543
Target Start/End: Complemental strand, 4639107 - 4638838
Alignment:
| Q |
281 |
aaaaaagagaagctaggtgaacgagttgcagcgttacaacaacttgtttcaccctttggcaaggtaaattaga--tatattttccagtgttattagg-tt |
377 |
Q |
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| T |
4639107 |
aaaaaaaagaagcttggtgaacgaattgcagcgttacaaca---tgtttcaccctttggcaaggtaaattagtagtatattttccagtgttattaaaatt |
4639011 |
T |
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| Q |
378 |
attgtttgggaatt-------------tagtttttgaaaattg-------taaattgaaattgcatgtgcagactgatacagcttcggtgcttcacgagg |
457 |
Q |
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| T |
4639010 |
ataatttgggaattagtgaattgaatttagtttttgaaaattggaaattgtaaattgaaattgcatgtgcagactgatacagcttcggtgcttcacgagg |
4638911 |
T |
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| Q |
458 |
ctactggttacataagattcttacatgatcaagttcaggttctgtgctctccatacctgcaaccttcacaagttcaatttcaaaat |
543 |
Q |
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| T |
4638910 |
ctactggtt-------------acatgatcaagttcaggttctgtgctctccatgcctgcaaccttgacaagttcaatttcaaaat |
4638838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 120 - 195
Target Start/End: Complemental strand, 4639279 - 4639204
Alignment:
| Q |
120 |
tgaatatgtgtttgcatgtctctctcatcaacacaacaatattcttaaacaaagatgacaagtccttttctatatt |
195 |
Q |
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| T |
4639279 |
tgaatatgtatttgcatgtctctctcatcaacacaacaatattcttaaacaaagatgacaagtctttttctatatt |
4639204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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