View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5868-Insertion-6 (Length: 470)
Name: NF5868-Insertion-6
Description: NF5868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5868-Insertion-6 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 9 - 464
Target Start/End: Original strand, 15176405 - 15176858
Alignment:
| Q |
9 |
tccccattatatcgaaagtactatcattcaaaaacgtctccggcttaaatgccataggatcatcccaagccgaagaatctctccctatctctgccaccaa |
108 |
Q |
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| T |
15176405 |
tccccattatatcgaaagtactattattgataaacctctccggtttaaatgccataggatcatcccaagccgaaaaatctctccctatctccgccaccaa |
15176504 |
T |
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| Q |
109 |
gaaattcacagatgcaaaagtaggcatcgagtaaccacgtttaaaacaacttcctctgtcactctatgaggagcaacatagtgtaacggtggatgacgtc |
208 |
Q |
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| T |
15176505 |
gaaattcacagatgcaaaagtaggcaccgaataacca--tttaaaacaacctcttcggtcactctatgaggagcaacatagtgcaacggtggatgacgcc |
15176602 |
T |
|
| Q |
209 |
ttggcccttccaaaatcacagctttaagatatgacattttttaaaaatcttcttctctatttcccttctctattttatcatctccattctcccctttaat |
308 |
Q |
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| T |
15176603 |
ttagcccttccaaaattacagctttaagatatggcatttttttcaaatcttcttctctaatttctttctcctttttatcatctccaatcacccctttaat |
15176702 |
T |
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| Q |
309 |
ctcttgtacaagcttttcttgtatatcttggtacttcaccaaattccccatgatccattccaatgctgttgaagttgtatctgttcccgcatttagaaac |
408 |
Q |
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| T |
15176703 |
ctcttgtacaagtttttcttgtatatcttggtacttcaccaaattcgccatgatccattccaatgcagttgaagttgtatctgttcccgcatttagaaac |
15176802 |
T |
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| Q |
409 |
tcggaacatgaagtacaaatttgaccatcatcaagttggatccttttattatcttc |
464 |
Q |
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| T |
15176803 |
tcggaacataaagtacaaattttaccatcatcaagttggctccttttattatcttc |
15176858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 416
Target Start/End: Complemental strand, 26506582 - 26506512
Alignment:
| Q |
346 |
accaaattccccatgatccattccaatgctgttgaagttgtatctgttcccgcatttagaaactcggaaca |
416 |
Q |
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||||||||| |||| | ||| || ||||| |||||||||||||||||||| ||| | |||||||| ||||| |
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| T |
26506582 |
accaaattcgccataacccactctaatgcagttgaagttgtatctgttccggcagtgagaaactccgaaca |
26506512 |
T |
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