View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5868-Insertion-7 (Length: 391)
Name: NF5868-Insertion-7
Description: NF5868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5868-Insertion-7 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 9 - 380
Target Start/End: Original strand, 25048968 - 25049339
Alignment:
| Q |
9 |
cttttcccaaacagaaactgaccatgcaaaatgatgataattcaagtgttttgaattttagaggggtttgcaatactagtttaaatgttggttcattata |
108 |
Q |
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| T |
25048968 |
cttttcgcaaacagaaactgaccatgcaaaatgatgataattcaagtgttttgaattttagaggggtttgcaatactagtttaaatgttggttcattata |
25049067 |
T |
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| Q |
109 |
aggaaaaatcaaaccagcaatctcaggtaaaggtaaaagatacggataatttaaataattttgatttttctcccgtgtatgtcttttaaatgtcttgcct |
208 |
Q |
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| T |
25049068 |
aggaaaaatcaaaccagcaatctcaggtaaaggtaaaagattcggataatttaaataattttgatttttctcccgtgcatgtcttttaaatgtcttgcct |
25049167 |
T |
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| Q |
209 |
tttaattcaccnnnnnnnnntgtcttgccttttcactatgcagaaaaatgctttgcaaatgctagattttacaatccacacaagtcatgattttgcacct |
308 |
Q |
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| T |
25049168 |
tttaattcaccaaaaaaaaatgtctttccttttcactatgcagaaaaatgctttgcaaatgctagattttacaatccacacaagtcatgattttgcacct |
25049267 |
T |
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| Q |
309 |
caggatccatgctaatcaagtgaatgtattgttgcgatcctcgactgatgcgggtctttttcatggttactc |
380 |
Q |
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| T |
25049268 |
caggatccatgctaatcaagtgaatgtattgatgcaatccttgactgatgcgggtctttttcatggttactc |
25049339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 95
Target Start/End: Original strand, 50675650 - 50675720
Alignment:
| Q |
25 |
actgaccatgcaaaatgatgataattcaagtgttttgaattttagaggggtttgcaatactagtttaaatg |
95 |
Q |
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| T |
50675650 |
actggccatgcaaattgatgatcattcaagtgttttgaattttagaagggtgtgcaatgctagttcaaatg |
50675720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 290 - 333
Target Start/End: Complemental strand, 28753331 - 28753288
Alignment:
| Q |
290 |
aagtcatgattttgcacctcaggatccatgctaatcaagtgaat |
333 |
Q |
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| T |
28753331 |
aagtcatgattttgcacctcaggattcatgctaatcaagtgaat |
28753288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 48885881 - 48885962
Alignment:
| Q |
25 |
actgaccatgcaaaatgatgataattcaagtgttttgaattttagaggggtttgcaatactagtttaaatgttggttcatta |
106 |
Q |
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| T |
48885881 |
actgcccatgcaaattgacaatcattcaagtgttgtgaattttagaagtgtttgcaacgctagttcaaatgatggttcatta |
48885962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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