View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5868-Insertion-8 (Length: 334)

Name: NF5868-Insertion-8
Description: NF5868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5868-Insertion-8
NF5868-Insertion-8
[»] chr8 (1 HSPs)
chr8 (9-334)||(29457816-29458141)


Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 9 - 334
Target Start/End: Original strand, 29457816 - 29458141
Alignment:
Q  9 attcctgcacattacctcactactcgttatacataaattttgctttacttagaataaaagaggggaaaaagccaactcaatacataacaattgcataatg 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  29457816 attcctgcacattacctcactactcgttatacataaattttgctttacttagaataaaagaggggaaaaagccaactcaatacataacaattgtataatg 29457915  T
Q  109 gcaacaaagaaaattcaggaaaaagaagtagaagctcccatccatggagatatcttagaggccacactttcgtacgtgccactcatttacttggtgccag 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29457916 gcaacaaagaaaattcaggaaaaagaagtagaagctcccatccatggagatatcttagaggccacactttcgtacgtgccactcatttacttggtgccag 29458015  T
Q  209 ccagttacgtgtcaaagcaatggaaccatgcagtattgagctccctccgccacgtcaaccccgtgaagccgtggctcacggttcacactcaaaacccccg 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29458016 ccagttacgtgtcaaagcaatggaaccatgcagtattgagctccctccgccatgtcaaccccgtgaagccgtggctcacggttcacactcaaaacccccg 29458115  T
Q  309 agctccccacgtgaccacaacatatg 334  Q
    ||||||||||||||||||||||||||    
T  29458116 agctccccacgtgaccacaacatatg 29458141  T

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