View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5868_high_15 (Length: 210)

Name: NF5868_high_15
Description: NF5868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5868_high_15
NF5868_high_15
[»] chr5 (3 HSPs)
chr5 (12-172)||(24092128-24092286)
chr5 (63-172)||(12842886-12842993)
chr5 (83-172)||(37022699-37022786)
[»] chr2 (4 HSPs)
chr2 (12-100)||(36314701-36314789)
chr2 (63-172)||(20925425-20925531)
chr2 (95-176)||(36313801-36313883)
chr2 (60-176)||(37758971-37759086)
[»] chr4 (2 HSPs)
chr4 (82-172)||(6746722-6746812)
chr4 (63-172)||(14026968-14027075)
[»] chr1 (13 HSPs)
chr1 (82-172)||(14476940-14477028)
chr1 (82-172)||(23200323-23200411)
chr1 (83-172)||(14471577-14471664)
chr1 (82-172)||(23202692-23202780)
chr1 (63-172)||(2797038-2797145)
chr1 (82-172)||(39170115-39170203)
chr1 (63-172)||(2790608-2790715)
chr1 (60-172)||(21010429-21010540)
chr1 (63-172)||(42375279-42375386)
chr1 (12-62)||(21010556-21010606)
chr1 (12-60)||(24567504-24567552)
chr1 (21-62)||(394922-394963)
chr1 (60-168)||(14632690-14632796)
[»] chr8 (6 HSPs)
chr8 (63-172)||(91739-91846)
chr8 (63-172)||(86422-86529)
chr8 (63-172)||(29010815-29010922)
chr8 (63-172)||(19802893-19803000)
chr8 (60-168)||(26491781-26491888)
chr8 (18-58)||(26491902-26491942)
[»] chr3 (10 HSPs)
chr3 (86-172)||(4099771-4099855)
chr3 (82-172)||(4100027-4100118)
chr3 (82-172)||(5378047-5378136)
chr3 (82-172)||(5383383-5383472)
chr3 (63-172)||(13719188-13719295)
chr3 (63-172)||(6806617-6806724)
chr3 (12-84)||(4099669-4099741)
chr3 (63-168)||(13723089-13723192)
chr3 (60-168)||(2185356-2185463)
chr3 (58-172)||(23619338-23619450)
[»] scaffold0015 (2 HSPs)
scaffold0015 (63-172)||(24244-24351)
scaffold0015 (63-172)||(29560-29667)
[»] chr6 (4 HSPs)
chr6 (63-172)||(16777835-16777942)
chr6 (63-172)||(32708164-32708271)
chr6 (63-172)||(16772499-16772606)
chr6 (65-172)||(32703789-32703894)
[»] chr7 (7 HSPs)
chr7 (63-172)||(11716542-11716649)
chr7 (62-172)||(13160492-13160602)
chr7 (62-172)||(13166948-13167058)
chr7 (115-172)||(11711349-11711404)
chr7 (63-110)||(11709026-11709073)
chr7 (81-125)||(34379058-34379102)
chr7 (60-160)||(37063142-37063241)


Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 12 - 172
Target Start/End: Complemental strand, 24092286 - 24092128
Alignment:
Q  12 acaaaccaccatgtttgacattttctattattactagattgtgtttccattactatttcaactaccatttggcctctaggactactataaataaggccat 111  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  24092286 acaagccaccatgtttgacattttctatttttactagattgtgtttccattactatttcaactaccatatggcctctaggattactataaataaggccat 24092187  T
Q  112 tttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctcatttgagagt 172  Q
    || |||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||    
T  24092186 ttccttcatgtattctcacaatttgaaatatat--aaaacttgagtttctcatttgagagt 24092128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 63 - 172
Target Start/End: Original strand, 12842886 - 12842993
Alignment:
Q  63 actatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctc 162  Q
    ||||||||| ||||||| |||||||||||| | ||||||||||||||| || ||||||||||   |||||||||||||||||  ||||||||||||||||    
T  12842886 actatttcagctaccatatggcctctaggattgctataaataaggccacttccttcatgtattaccacaatttgaaatatat--aaaacttgagtttctc 12842983  T
Q  163 atttgagagt 172  Q
    ||||||||||    
T  12842984 atttgagagt 12842993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 172
Target Start/End: Complemental strand, 37022786 - 37022699
Alignment:
Q  83 gcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctcatttgagagt 172  Q
    |||||||||| | ||||||||||||||| || ||||||||||   |||||||||||||||||  ||||||||||||||||||||||||||    
T  37022786 gcctctaggattgctataaataaggccacttccttcatgtattaccacaatttgaaatatat--aaaacttgagtttctcatttgagagt 37022699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 3e-38; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 36314789 - 36314701
Alignment:
Q  12 acaaaccaccatgtttgacattttctattattactagattgtgtttccattactatttcaactaccatttggcctctaggactactata 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  36314789 acaaaccaccatgtttgacattttctattattactagattgtgtttccattactatttcaactaccatttggtctgtaggactactata 36314701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 20925531 - 20925425
Alignment:
Q  63 actatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctc 162  Q
    ||||||||| ||||||| |||||||||||| | |||||||||||||||  ||||||||||||   |||||||||||||||||  ||||||||||||||||    
T  20925531 actatttcagctaccatatggcctctaggattgctataaataaggcca-cttcttcatgtattaccacaatttgaaatatat--aaaacttgagtttctc 20925435  T
Q  163 atttgagagt 172  Q
    ||||||||||    
T  20925434 atttgagagt 20925425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 36313883 - 36313801
Alignment:
Q  95 actataaataaggccattttcttcatgtatcctcacaatttgaaatatataa-aaaacttgagtttctcatttgagagtggat 176  Q
    |||||||||||||  |||| |||| ||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||    
T  36313883 actataaataaggttatttccttcctgtatcctcacaatttgaaatatataaaaaaacttgagttactcgtttgagagtggat 36313801  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 60 - 176
Target Start/End: Original strand, 37758971 - 37759086
Alignment:
Q  60 attactatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagttt 159  Q
    ||||||||||||||||| || ||||||||| || | |||||||||||  || || |||||| |||| |||  | |||||||||||  |||||||||||||    
T  37758971 attactatttcaactacaatctggcctctaagattgctataaataagatcacttccttcatatatcatcatcaattgaaatatat-taaaacttgagttt 37759069  T
Q  160 ctcatttgagagtggat 176  Q
    ||||||| |||||||||    
T  37759070 ctcatttaagagtggat 37759086  T

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Target: chr4 (Bit Score: 71; Significance: 2e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 6746812 - 6746722
Alignment:
Q  82 ggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctcatttgagagt 172  Q
    ||||||||||| |||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||| |||||||||||||||||    
T  6746812 ggcctctaggattactataaataaggccatttccttcatgtataatcacaatttgaaatatataaaaaacttgcgtttctcatttgagagt 6746722  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 63 - 172
Target Start/End: Original strand, 14026968 - 14027075
Alignment:
Q  63 actatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctc 162  Q
    ||||||||| |||||||  ||||||| ||| | ||||||||||||||| || ||||||||||   |||||||||||||||||  ||||||||||||||||    
T  14026968 actatttcagctaccatacggcctctgggattgctataaataaggccacttccttcatgtattaccacaatttgaaatatat--aaaacttgagtttctc 14027065  T
Q  163 atttgagagt 172  Q
    ||||||||||    
T  14027066 atttgagagt 14027075  T

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Target: chr1 (Bit Score: 68; Significance: 1e-30; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 14477028 - 14476940
Alignment:
Q  82 ggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctcatttgagagt 172  Q
    ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||    
T  14477028 ggcctctaggattactataaataaggccatttccttcatgtatcatcacaatttgaaatatat--aaaacttgagtttctcatttgagagt 14476940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 23200323 - 23200411
Alignment:
Q  82 ggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctcatttgagagt 172  Q
    ||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||    
T  23200323 ggcctctaggattactataaataaggccatttccttcatgtatcatcacaatttgaaatatat--aaaacttgagtttctcatttgagagt 23200411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 83 - 172
Target Start/End: Complemental strand, 14471664 - 14471577
Alignment:
Q  83 gcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctcatttgagagt 172  Q
    |||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||    
T  14471664 gcctctaggattactataaataaggccatttccttcatgtatcatcacaatttgaaatatat--aaaacttgagtttctcatttgagagt 14471577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 23202692 - 23202780
Alignment:
Q  82 ggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctcatttgagagt 172  Q
    ||||||||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||||   |||||||||||||||||||||||||    
T  23202692 ggcctctaggattactataaataaggacatttccttcatgtatcatcacaatttgaaatatat--taaacttgagtttctcatttgagagt 23202780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 2797145 - 2797038
Alignment:
Q  63 actatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctc 162  Q
    ||||||||| ||||||| |||||||||||| | |||||||||||| || || ||||||||||   |||||||||||||||||  ||||||||||||||||    
T  2797145 actatttcagctaccatatggcctctaggattgctataaataaggtcacttccttcatgtattaccacaatttgaaatatat--aaaacttgagtttctc 2797048  T
Q  163 atttgagagt 172  Q
    ||||||||||    
T  2797047 atttgagagt 2797038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 39170115 - 39170203
Alignment:
Q  82 ggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctcatttgagagt 172  Q
    ||||||||||| ||||| || ||||||||||| ||||||| ||| ||||||||||||||||||  ||||||||||||||||||||||||||    
T  39170115 ggcctctaggattactaaaactaaggccatttccttcatgcatcatcacaatttgaaatatat--aaaacttgagtttctcatttgagagt 39170203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 2790715 - 2790608
Alignment:
Q  63 actatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctc 162  Q
    ||||||||| ||||||| |||||| || || | ||||||||||||||| || ||||||||||   |||||||||||||||||  ||||||||||||||||    
T  2790715 actatttcagctaccatatggcctttaagattgctataaataaggccacttccttcatgtattaccacaatttgaaatatat--aaaacttgagtttctc 2790618  T
Q  163 atttgagagt 172  Q
    ||||||||||    
T  2790617 atttgagagt 2790608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 60 - 172
Target Start/End: Complemental strand, 21010540 - 21010429
Alignment:
Q  60 attactatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagttt 159  Q
    ||||||||||||||||| || |||||||||||| | ||||||||||| ||| || |||||||||||  ||  | ||||||||||| ||||||||||||||    
T  21010540 attactatttcaactacaatctggcctctaggattgctataaataagaccacttccttcatgtatcaacatcaattgaaatatat-aaaaacttgagttt 21010442  T
Q  160 ctcatttgagagt 172  Q
    ||||||| |||||    
T  21010441 ctcatttcagagt 21010429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 63 - 172
Target Start/End: Original strand, 42375279 - 42375386
Alignment:
Q  63 actatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctc 162  Q
    ||||||||| ||||||| || ||||||||| | ||||||||||||||| ||  |||||||||   ||||||||  || ||||| ||||||||||||||||    
T  42375279 actatttcagctaccatatgacctctaggattgctataaataaggccacttctttcatgtattaccacaattt--aaaatatacaaaacttgagtttctc 42375376  T
Q  163 atttgagagt 172  Q
    ||||||||||    
T  42375377 atttgagagt 42375386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 21010606 - 21010556
Alignment:
Q  12 acaaaccaccatgtttgacattttctattattactagattgtgtttccatt 62  Q
    |||| ||||||||||||||| | |||||| |||||||||||||||||||||    
T  21010606 acaagccaccatgtttgacaatatctatttttactagattgtgtttccatt 21010556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 24567552 - 24567504
Alignment:
Q  12 acaaaccaccatgtttgacattttctattattactagattgtgtttcca 60  Q
    |||| ||||||||||||||| | |||||| |||||||||||||||||||    
T  24567552 acaagccaccatgtttgacaatatctatttttactagattgtgtttcca 24567504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 394963 - 394922
Alignment:
Q  21 catgtttgacattttctattattactagattgtgtttccatt 62  Q
    ||||||||||| | |||||| |||||||||||||||||||||    
T  394963 catgtttgacaatatctatttttactagattgtgtttccatt 394922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 168
Target Start/End: Complemental strand, 14632796 - 14632690
Alignment:
Q  60 attactatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagttt 159  Q
    ||||||||||||||||| || || |||||| || | |||||||| ||| || || |||| |||||| |||  | ||||||||| |  |||| ||||||||    
T  14632796 attactatttcaactacaatctgacctctaagattgctataaatgaggtcacttccttcgtgtatcatcatgaattgaaatattt--aaaatttgagttt 14632699  T
Q  160 ctcatttga 168  Q
    |||||||||    
T  14632698 ctcatttga 14632690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 63 - 172
Target Start/End: Original strand, 91739 - 91846
Alignment:
Q  63 actatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctc 162  Q
    ||||||||| ||||||| |||||||||||| | ||||||||||||||| |||||||||||||   |||||||||||||||||  ||||||||||||||||    
T  91739 actatttcagctaccatatggcctctaggattgctataaataaggccactttcttcatgtattaccacaatttgaaatatat--aaaacttgagtttctc 91836  T
Q  163 atttgagagt 172  Q
    ||||||||||    
T  91837 atttgagagt 91846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 63 - 172
Target Start/End: Original strand, 86422 - 86529
Alignment:
Q  63 actatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctc 162  Q
    ||||||||| ||||||| |||||||||||| | ||||||||||||||| || ||||||||||   |||||||||||||||||  ||||||||||||||||    
T  86422 actatttcagctaccatatggcctctaggattgctataaataaggccacttccttcatgtattaccacaatttgaaatatat--aaaacttgagtttctc 86519  T
Q  163 atttgagagt 172  Q
    ||||||||||    
T  86520 atttgagagt 86529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 29010922 - 29010815
Alignment:
Q  63 actatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctc 162  Q
    ||||||||| ||||||| |||||||||||| | |||||||||||| || || ||||||||||   |||||||||||||||||  ||||||||||||||||    
T  29010922 actatttcagctaccatatggcctctaggattgctataaataaggtcacttccttcatgtattaccacaatttgaaatatat--aaaacttgagtttctc 29010825  T
Q  163 atttgagagt 172  Q
    ||||||||||    
T  29010824 atttgagagt 29010815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 63 - 172
Target Start/End: Original strand, 19802893 - 19803000
Alignment:
Q  63 actatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctc 162  Q
    ||||||||| ||||||| |||||||||||| | ||||||||||||||| || ||||||||||    ||||||||||||||||  |||||||||||||||     
T  19802893 actatttcagctaccatatggcctctaggattgctataaataaggccacttccttcatgtattacaacaatttgaaatatat--aaaacttgagtttcta 19802990  T
Q  163 atttgagagt 172  Q
    ||||||||||    
T  19802991 atttgagagt 19803000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 168
Target Start/End: Complemental strand, 26491888 - 26491781
Alignment:
Q  60 attactatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctca-caatttgaaatatataaaaaacttgagtt 158  Q
    |||||||| |||||||| || ||||||||| || | |||||||||||| || || |||| || ||| ||| |||||||||||||||  |||| |||||||    
T  26491888 attactatatcaactacaatctggcctctaagattgctataaataaggtcacttccttcctgcatcatcatcaatttgaaatatat--aaaatttgagtt 26491791  T
Q  159 tctcatttga 168  Q
    ||||||||||    
T  26491790 tctcatttga 26491781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 26491942 - 26491902
Alignment:
Q  18 caccatgtttgacattttctattattactagattgtgtttc 58  Q
    |||||||||||||| | |||||| |||||||||||||||||    
T  26491942 caccatgtttgacaatgtctatttttactagattgtgtttc 26491902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 86 - 172
Target Start/End: Complemental strand, 4099855 - 4099771
Alignment:
Q  86 tctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctcatttgagagt 172  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||    
T  4099855 tctaggattactataaataaggtcattttcttcatgtatcctcacaatttgaaatatat--aaaacttgagtttctcttttgagagt 4099771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 4100027 - 4100118
Alignment:
Q  82 ggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatat-aaaaaacttgagtttctcatttgagagt 172  Q
    ||||||||||| ||||||||||||||| |||| ||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||    
T  4100027 ggcctctaggattactataaataaggctatttccttcatgtattatcacaatttgaaatatataaaaaaacttgagtttctcatttgagagt 4100118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 5378136 - 5378047
Alignment:
Q  82 ggcctctaggactactataaataaggccattttcttcatgtatcctcacaa-tttgaaatatataaaaaacttgagtttctcatttgagagt 172  Q
    ||||||||||| |||||||||||||||||||| ||||||||||| |||||| ||||||||||||  ||||||||||||||||||||||||||    
T  5378136 ggcctctaggattactataaataaggccatttccttcatgtatcatcacaattttgaaatatat--aaaacttgagtttctcatttgagagt 5378047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 5383472 - 5383383
Alignment:
Q  82 ggcctctaggactactataaataaggccattttcttcatgtatcctcacaa-tttgaaatatataaaaaacttgagtttctcatttgagagt 172  Q
    ||||||||||| |||||||||||||||||||| ||||||||||| |||||| ||||||||||||  ||||||||||||||||||||||||||    
T  5383472 ggcctctaggattactataaataaggccatttccttcatgtatcatcacaattttgaaatatat--aaaacttgagtttctcatttgagagt 5383383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 13719295 - 13719188
Alignment:
Q  63 actatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctc 162  Q
    ||||||||| ||||||| ||||||||| || | ||||||||||||||| ||| |||||||||   |||||||||||||||||  ||||||||||||||||    
T  13719295 actatttcagctaccatatggcctctatgattgctataaataaggccacttttttcatgtattaccacaatttgaaatatat--aaaacttgagtttctc 13719198  T
Q  163 atttgagagt 172  Q
    ||||||||||    
T  13719197 atttgagagt 13719188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 6806724 - 6806617
Alignment:
Q  63 actatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctc 162  Q
    ||||||||| ||||||| | |||||||||| | |||||||||||| || || ||||||||||   |||||||||||||||||  ||||||||||||||||    
T  6806724 actatttcagctaccatatagcctctaggattgctataaataaggtcacttccttcatgtattaccacaatttgaaatatat--aaaacttgagtttctc 6806627  T
Q  163 atttgagagt 172  Q
    ||||||||||    
T  6806626 atttgagagt 6806617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 4099669 - 4099741
Alignment:
Q  12 acaaaccaccatgtttgacattttctattattactagattgtgtttccattactatttcaactaccatttggc 84  Q
    |||| ||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||    
T  4099669 acaagccaccatttttgacattttctatttttactagattgtgtttccattattatttcaactaccatatggc 4099741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 13723192 - 13723089
Alignment:
Q  63 actatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctc 162  Q
    ||||||||| ||||||| |||||||||||| | |||||||||||||   || ||||||||||   |||||||||||||||||  ||||||||||||||||    
T  13723192 actatttcagctaccatatggcctctaggattgctataaataaggctcattccttcatgtattaccacaatttgaaatatat--aaaacttgagtttctc 13723095  T
Q  163 atttga 168  Q
    ||||||    
T  13723094 atttga 13723089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 60 - 168
Target Start/End: Original strand, 2185356 - 2185463
Alignment:
Q  60 attactatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagttt 159  Q
    |||| ||||||| |||| || |||||||||||| | ||||||| ||||||| || ||||||||||| |||  | |||||||||||  |||||||||||||    
T  2185356 attattatttcatctacaatctggcctctaggattgctataaacaaggccacttccttcatgtatcatcatcaattgaaatatat-gaaaacttgagttt 2185454  T
Q  160 ctcatttga 168  Q
    |||||||||    
T  2185455 ctcatttga 2185463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 172
Target Start/End: Original strand, 23619338 - 23619450
Alignment:
Q  58 ccattactatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagt 157  Q
    ||||||||||||||||||  || |||| ||||||| | |||||||||||  || || ||||||||||| |||  | | |||| ||||  |||||| ||||    
T  23619338 ccattactatttcaactaaaatctggcatctaggattgctataaataagatcacttccttcatgtatcatcatcaatggaaacatat--aaaactcgagt 23619435  T
Q  158 ttctcatttgagagt 172  Q
    |||||||||||||||    
T  23619436 ttctcatttgagagt 23619450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 63; Significance: 1e-27; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 24351 - 24244
Alignment:
Q  63 actatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctc 162  Q
    ||||||||| ||||||| |||||||||||| | ||||||||||||||| || ||||||||||   |||||||||||||||||  ||||||||||||||||    
T  24351 actatttcagctaccatatggcctctaggattgctataaataaggccacttccttcatgtattaccacaatttgaaatatat--aaaacttgagtttctc 24254  T
Q  163 atttgagagt 172  Q
    ||||||||||    
T  24253 atttgagagt 24244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 29667 - 29560
Alignment:
Q  63 actatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctc 162  Q
    ||||||||| ||||||| |||||||||||| | ||||||||||||||| || ||||||||||   |||||||||||||||||  ||||||||||||||||    
T  29667 actatttcagctaccatatggcctctaggattgctataaataaggccacttccttcatgtattaccacaatttgaaatatat--aaaacttgagtttctc 29570  T
Q  163 atttgagagt 172  Q
    ||||||||||    
T  29569 atttgagagt 29560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 1e-27; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 16777942 - 16777835
Alignment:
Q  63 actatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctc 162  Q
    ||||||||| ||||||| |||||||||||| | ||||||||||||||| || ||||||||||   |||||||||||||||||  ||||||||||||||||    
T  16777942 actatttcagctaccatatggcctctaggattgctataaataaggccacttccttcatgtattaccacaatttgaaatatat--aaaacttgagtttctc 16777845  T
Q  163 atttgagagt 172  Q
    ||||||||||    
T  16777844 atttgagagt 16777835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 63 - 172
Target Start/End: Original strand, 32708164 - 32708271
Alignment:
Q  63 actatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctc 162  Q
    ||||||||| ||||||| |||||||||||| | ||||||||||||||| || ||||||||||   |||||||||||||||||  ||||||||||||||||    
T  32708164 actatttcagctaccatatggcctctaggattgctataaataaggccacttccttcatgtattaccacaatttgaaatatat--aaaacttgagtttctc 32708261  T
Q  163 atttgagagt 172  Q
    ||||||||||    
T  32708262 atttgagagt 32708271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 16772606 - 16772499
Alignment:
Q  63 actatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctc 162  Q
    ||||||||| ||||||| ||||||||||||   ||||||||||||||| || ||||||||||   |||||||||||||||||  ||||||||||||||||    
T  16772606 actatttcagctaccatatggcctctaggatagctataaataaggccacttccttcatgtattaccacaatttgaaatatat--aaaacttgagtttctc 16772509  T
Q  163 atttgagagt 172  Q
    ||||||||||    
T  16772508 atttgagagt 16772499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 65 - 172
Target Start/End: Original strand, 32703789 - 32703894
Alignment:
Q  65 tatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctcat 164  Q
    ||||||| ||||||| || ||||||||| | ||||||||||||||| || ||||||||||   ||||||||||||| |||  ||||||||||||||||||    
T  32703789 tatttcagctaccatatgacctctaggattgctataaataaggccacttccttcatgtattaccacaatttgaaatgtat--aaaacttgagtttctcat 32703886  T
Q  165 ttgagagt 172  Q
    ||||||||    
T  32703887 ttgagagt 32703894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 63 - 172
Target Start/End: Original strand, 11716542 - 11716649
Alignment:
Q  63 actatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctc 162  Q
    ||||||||| ||||||| |||||||||||| | |||||||||| |||| || |||||||||||  || ||||||||||||||  ||||||||||||||||    
T  11716542 actatttcagctaccatatggcctctaggattgctataaataatgccacttccttcatgtatcaccataatttgaaatatat--aaaacttgagtttctc 11716639  T
Q  163 atttgagagt 172  Q
    ||||||||||    
T  11716640 atttgagagt 11716649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 62 - 172
Target Start/End: Original strand, 13160492 - 13160602
Alignment:
Q  62 tactatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctca-caatttgaaatatataaaaaacttgagtttc 160  Q
    |||||||||| ||||||| |||||||||||| | ||||||||||||| | || ||||||||||  ||| ||||||||||||||| |||||||||||||||    
T  13160492 tactatttcagctaccatatggcctctaggattgctataaataaggctacttccttcatgtattatcaccaatttgaaatatat-aaaaacttgagtttc 13160590  T
Q  161 tcatttgagagt 172  Q
    |||| |||||||    
T  13160591 tcatatgagagt 13160602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 62 - 172
Target Start/End: Original strand, 13166948 - 13167058
Alignment:
Q  62 tactatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctca-caatttgaaatatataaaaaacttgagtttc 160  Q
    |||||||||| ||||| | |||||||||||| | |||||||||||| || || ||||||||||  ||| ||||||||||||||| |||||||||||||||    
T  13166948 tactatttcagctaccttatggcctctaggattgctataaataaggtcacttccttcatgtattatcaccaatttgaaatatat-aaaaacttgagtttc 13167046  T
Q  161 tcatttgagagt 172  Q
    ||||||||||||    
T  13167047 tcatttgagagt 13167058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 11711349 - 11711404
Alignment:
Q  115 cttcatgtatcctcacaatttgaaatatataaaaaacttgagtttctcatttgagagt 172  Q
    |||||||||||  |||||||||||||||||||||  ||||||||||||||||||||||    
T  11711349 cttcatgtatcaccacaatttgaaatatataaaa--cttgagtttctcatttgagagt 11711404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 110
Target Start/End: Original strand, 11709026 - 11709073
Alignment:
Q  63 actatttcaactaccatttggcctctaggactactataaataaggcca 110  Q
    ||||||||| ||||||| |||||||||||| | |||||||||||||||    
T  11709026 actatttcagctaccatatggcctctaggattgctataaataaggcca 11709073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 34379058 - 34379102
Alignment:
Q  81 tggcctctaggactactataaataaggccattttcttcatgtatc 125  Q
    |||| ||||||| |||||||||||||| ||||| |||||||||||    
T  34379058 tggcttctaggattactataaataaggtcatttccttcatgtatc 34379102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 37063142 - 37063241
Alignment:
Q  60 attactatttcaactaccatttggcctctaggactactataaataaggccattttcttcatgtatcctcacaatttgaaatatataaaaaacttgagttt 159  Q
    ||||||||||||||||| || |  ||||||| | | |||||||||| | || || ||| ||||||| |||  | ||||||||||| ||||||||||||||    
T  37063142 attactatttcaactacaatataacctctagaattgctataaataatgtcacttcctttatgtatcatcattaattgaaatatat-aaaaacttgagttt 37063240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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