View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5868_high_7 (Length: 282)
Name: NF5868_high_7
Description: NF5868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5868_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 247
Target Start/End: Complemental strand, 35016383 - 35016148
Alignment:
| Q |
12 |
aattctcccaaataggtactctctctttgatttgaagccagagccagagactttgtcaagggaaagtgatagaagttgaccaccattgaatatcttagca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35016383 |
aattctcccaaataggtactctctctttgatttgaagccagagccagagactttgtcaagggaaagtgatagaagttgaccaccattgaatatcttagca |
35016284 |
T |
|
| Q |
112 |
cggttatcaccccatgttagatcaaagtcttggtagaaactaccagcacaagtagccaccatagagctaaccataatagcaattagcataaacacatgaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35016283 |
cggttatcaccccatgttagatcaaagtcttggtagaaactaccagcacaagtagccaccatagagctaaccattatagcaattagcataaacacatgaa |
35016184 |
T |
|
| Q |
212 |
actcattgtgagtagaattagaagccattttggaca |
247 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
35016183 |
actcattgtgagtagaattagaagccattttggaca |
35016148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 42990790 - 42990652
Alignment:
| Q |
12 |
aattctcccaaataggtactctctctttgatttgaagccagagccagagactttgtcaagggaaagtgatagaagttgaccaccattgaatatcttagca |
111 |
Q |
| |
|
|||||| || |||| ||||||| |||| || | |||||||||||| ||||||||||| || |||||||| ||||| |||||||| |||||| |||||||| |
|
|
| T |
42990790 |
aattctaccgaataagtactctttcttggactggaagccagagccggagactttgtcgagagaaagtgaaagaagctgaccaccgttgaatgtcttagca |
42990691 |
T |
|
| Q |
112 |
cggttatcaccccatgttagatcaaagtcttggtagaaa |
150 |
Q |
| |
|
|||| ||| ||||||||||||||||| |||||||||||| |
|
|
| T |
42990690 |
cggtgatcgccccatgttagatcaaaatcttggtagaaa |
42990652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 38214752 - 38214885
Alignment:
| Q |
12 |
aattctcccaaataggtactctctctttgatttgaagccagagccagagactttgtcaagggaaagtgatagaagttgaccaccattgaatatcttagca |
111 |
Q |
| |
|
|||||| ||||||| |||||| |||| |||| ||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38214752 |
aattctaccaaataaatactctttcttggattggaagccagagccagaagttttatcaagagaaagagatagaagttgaccaccattgaatatcttagca |
38214851 |
T |
|
| Q |
112 |
cggttatcaccccatgttagatcaaagtcttggt |
145 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| |
|
|
| T |
38214852 |
cggtggtcaccccaagttagatcaaagtcttggt |
38214885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 12 - 145
Target Start/End: Original strand, 38218973 - 38219106
Alignment:
| Q |
12 |
aattctcccaaataggtactctctctttgatttgaagccagagccagagactttgtcaagggaaagtgatagaagttgaccaccattgaatatcttagca |
111 |
Q |
| |
|
|||||| ||||||| |||||| |||| |||| ||||||||||||||| ||| ||||| ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
38218973 |
aattctaccaaataaatactctttcttggattggaagccagagccagaagttttatcaagagaaagagatagaagttgaccaccattgaatatcttagca |
38219072 |
T |
|
| Q |
112 |
cggttatcaccccatgttagatcaaagtcttggt |
145 |
Q |
| |
|
|||| |||||||| ||||||||||||||||||| |
|
|
| T |
38219073 |
cggtggtcaccccaagttagatcaaagtcttggt |
38219106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University