View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5868_high_9 (Length: 258)

Name: NF5868_high_9
Description: NF5868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5868_high_9
NF5868_high_9
[»] chr3 (2 HSPs)
chr3 (20-258)||(33130293-33130531)
chr3 (106-177)||(54670806-54670877)
[»] chr2 (1 HSPs)
chr2 (54-215)||(15480279-15480440)
[»] chr7 (3 HSPs)
chr7 (106-215)||(5568559-5568668)
chr7 (106-258)||(3615068-3615214)
chr7 (106-258)||(35611334-35611477)
[»] chr4 (3 HSPs)
chr4 (106-210)||(9981339-9981443)
chr4 (107-184)||(20855558-20855635)
chr4 (109-184)||(46355960-46356035)
[»] scaffold1903 (1 HSPs)
scaffold1903 (106-215)||(444-553)
[»] chr8 (1 HSPs)
chr8 (106-181)||(14735365-14735440)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 20 - 258
Target Start/End: Complemental strand, 33130531 - 33130293
Alignment:
Q  20 tcaggatcagctacactcaaaggttgatttccccaactcacagccttagaatccaccgcaacacgcttcgccggaacaaaactttgttgtgtttcttcct 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33130531 tcaggatcagctacactcaaaggttgatttccccaactcacagccttagaatccaccgcaacacgcttcgccggaacaaaactttgttgtgtttcttcct 33130432  T
Q  120 ctaatctcctcttgaaacaaataggcctacccatgaaatcaattgtttcaccttcttcttcaccaacaccatcaacaacttcatcttgttcctgttcctg 219  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  33130431 ctaatctcctcttgaaacaaataggtctacccataaaatcaattgtttcaccttcttcttcaccaacaccatcaacaacttcatcttgttcctgttcttg 33130332  T
Q  220 tttgatgagattaagatgaacattgttgtctggtttttc 258  Q
    |||||||||||||||||||||||||||||||||||||||    
T  33130331 tttgatgagattaagatgaacattgttgtctggtttttc 33130293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 106 - 177
Target Start/End: Original strand, 54670806 - 54670877
Alignment:
Q  106 ttgtgtttcttcctctaatctcctcttgaaacaaataggcctacccatgaaatcaattgtttcaccttcttc 177  Q
    ||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||| || ||||||    
T  54670806 ttgtgtttcttcctctaatctcctcgtgaaacaaaaagccctacccatgaaatcaattgtttaactttcttc 54670877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 54 - 215
Target Start/End: Original strand, 15480279 - 15480440
Alignment:
Q  54 aactcacagccttagaatccaccgcaacacgcttcgccggaacaaaactttgttgtgtttcttcctctaatctcctcttgaaacaaataggcctacccat 153  Q
    |||||||| |||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||     
T  15480279 aactcacaaccttagaatccaccgcgacacgcttcgctggaacaaaacttcgttgtgtttcttcctccaatctcctcttgaaacaaataggtctacccaa 15480378  T
Q  154 gaaatcaattgtttcaccttcttcttcaccaacaccatcaacaacttcatcttgttcctgtt 215  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||    
T  15480379 gaaatcaattgtttcaccttcctcttcaccatcaccatcaacaacttcatcttgttcttgtt 15480440  T

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Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 106 - 215
Target Start/End: Original strand, 5568559 - 5568668
Alignment:
Q  106 ttgtgtttcttcctctaatctcctcttgaaacaaataggcctacccatgaaatcaattgtttcaccttcttcttcaccaacaccatcaacaacttcatct 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  5568559 ttgtgtttcttcctctaatctcctcttgaaacaaataggcctacccatgaaatcaattgtttaaccttcttcttcaccatcaccatcaacaacttcatct 5568658  T
Q  206 tgttcctgtt 215  Q
    ||||| ||||    
T  5568659 tgttcttgtt 5568668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 106 - 258
Target Start/End: Complemental strand, 3615214 - 3615068
Alignment:
Q  106 ttgtgtttcttcctctaatctcctcttgaaacaaataggcctacccatgaaatcaattgtttcaccttcttcttcaccaacaccatcaacaacttcatct 205  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  3615214 ttgtgtttcttcctctgatctcctcttgaaacaaataggcctacccataaaatcaattgtttaaccttcttcttcaccatcaccatcaacaacttcatct 3615115  T
Q  206 tgttcctgttcctgtttgatgagattaagatgaacattgttgtctggtttttc 258  Q
    |      |||| ||||| |||||||||| ||||||||| || |||||||||||    
T  3615114 t------gttcttgttttatgagattaacatgaacatttttatctggtttttc 3615068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 106 - 258
Target Start/End: Original strand, 35611334 - 35611477
Alignment:
Q  106 ttgtgtttcttcctctaatctcctcttgaaacaaataggcctacccatgaaatcaattgtttcaccttcttcttcaccaacaccatcaacaacttcatct 205  Q
    ||||||||||||||||||||||||| ||||||||||| |  ||||||||||||||||||||| ||   ||||||||||| |||||||||||||||||       
T  35611334 ttgtgtttcttcctctaatctcctcatgaaacaaataagtttacccatgaaatcaattgtttaac---cttcttcaccatcaccatcaacaacttca--- 35611427  T
Q  206 tgttcctgttcctgtttgatgagattaagatgaacattgttgtctggtttttc 258  Q
       |||||||| ||||| |||||||||| ||||||||| || |||||||||||    
T  35611428 ---tcctgttcttgttttatgagattaacatgaacatttttatctggtttttc 35611477  T

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Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 106 - 210
Target Start/End: Original strand, 9981339 - 9981443
Alignment:
Q  106 ttgtgtttcttcctctaatctcctcttgaaacaaataggcctacccatgaaatcaattgtttcaccttcttcttcaccaacaccatcaacaacttcatct 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||     
T  9981339 ttgtgtttcttcctctaatctcctcttgaaacaaataggcctacccatgaaatcaattgtttaaccttcttcttcaccatcaccatcaacaacttcatcc 9981438  T
Q  206 tgttc 210  Q
    |||||    
T  9981439 tgttc 9981443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 107 - 184
Target Start/End: Complemental strand, 20855635 - 20855558
Alignment:
Q  107 tgtgtttcttcctctaatctcctcttgaaacaaataggcctacccatgaaatcaattgtttcaccttcttcttcacca 184  Q
    |||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||| ||| ||||||||||||    
T  20855635 tgtgtttcttcctctaatctcctcgtgaaacaaaaaggcctacacatgaaatcaattgtttaaccatcttcttcacca 20855558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 109 - 184
Target Start/End: Complemental strand, 46356035 - 46355960
Alignment:
Q  109 tgtttcttcctctaatctcctcttgaaacaaataggcctacccatgaaatcaattgtttcaccttcttcttcacca 184  Q
    |||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||||| ||| ||||||||||||    
T  46356035 tgtttcttcctctaatctcctcgtgaaacaaaaaggcctacccataaaatcaattgtttaaccatcttcttcacca 46355960  T

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Target: scaffold1903 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold1903
Description:

Target: scaffold1903; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 106 - 215
Target Start/End: Original strand, 444 - 553
Alignment:
Q  106 ttgtgtttcttcctctaatctcctcttgaaacaaataggcctacccatgaaatcaattgtttcaccttcttcttcaccaacaccatcaacaacttcatct 205  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||    
T  444 ttgtgtttcttcctctaatctcctcttgaaacaaatatgcctacccatgaaatcaattgtttaatcttcttcttcaccatcaccatcaacaacttcatct 543  T
Q  206 tgttcctgtt 215  Q
    ||||| ||||    
T  544 tgttcttgtt 553  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 181
Target Start/End: Complemental strand, 14735440 - 14735365
Alignment:
Q  106 ttgtgtttcttcctctaatctcctcttgaaacaaataggcctacccatgaaatcaattgtttcaccttcttcttca 181  Q
    ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||| |||||||||    
T  14735440 ttgtgtttcttcctctaatctcctcgtgaaacaaaaaggcctacccatgaaatcaattgtttaaccatcttcttca 14735365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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