View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5868_low_1 (Length: 911)
Name: NF5868_low_1
Description: NF5868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5868_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 867; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 867; E-Value: 0
Query Start/End: Original strand, 12 - 894
Target Start/End: Complemental strand, 1362491 - 1361609
Alignment:
| Q |
12 |
caaagggaaacacatgatatgaactctgtctacctagttgttggaattggaaggattcctatacttgtaaagagcagcaatgagatcatcaatatattga |
111 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1362491 |
caaagggaaacacatgatatgaactcagtctacctagttgttggaattggaaggattcctatacttgtaaagagcagcaatgagatcatcaatatattga |
1362392 |
T |
|
| Q |
112 |
ttatgaatatcttttgaactgaaaacgttccccaactctttagcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgag |
211 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1362391 |
ttatgaatatcttttgaactgaaaactttccccaactctttagcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgag |
1362292 |
T |
|
| Q |
212 |
ccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaacagccactcccttttccaccaatgcccttgaaaacaaacattggtcaag |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1362291 |
ccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaacagccactcccttttccaccaatgcccttgaaaacaaacattggtcaag |
1362192 |
T |
|
| Q |
312 |
caaataaggcagtgtcacaagaacatggccgaaatgaaccttctcaataacagaaccagaaccacagtgactcatacatccaccaattgctccatgagct |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1362191 |
caaataaggcagtgtcacaagaacatggccgaaatgaaccttctcaataacagaaccagaaccacagtgactcatacatccaccaattgctccatgagct |
1362092 |
T |
|
| Q |
412 |
aagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttcagat |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1362091 |
aagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttcagat |
1361992 |
T |
|
| Q |
512 |
tcttcaaagcccaaaagaaagacaacccagaaagctcaattccatgagccaactcagttaaatcattctgactcaacttcaactcactcccaaatccaat |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1361991 |
tcttcaaagcccaaaagaaagacaacccagaaagctcaattccatgagccaactcagttaaatcattctgactcaacttcaactcactcccaaatccaat |
1361892 |
T |
|
| Q |
612 |
gtaaacaacagaagatgattctcttgaatccaaccaccctttgattttcacccaatcaggattgttcgcttcctcttcatcgtctcttatctgcatagat |
711 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1361891 |
gtaaacaacagaagatgattctcttgaatccaaccaccctttgattttcacccaatcaggattgttctcttcctcttcatcgtctcttatctgcatagat |
1361792 |
T |
|
| Q |
712 |
ggtggaagcaacccaacaggaacgacaggaaccttgtattgttcagagatataatccaaccattcaccttcaagttctcttgaggttctgagaagaaaaa |
811 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1361791 |
ggtggaagcaacccaacaggaacgacaggaaccttgtactgttcagagatataatccaaccattcaccttcaagttctcttgaggttctgagaagaaaaa |
1361692 |
T |
|
| Q |
812 |
gatcacaactcgaataagctttgttgagatcaaaaccagctattccacctgattcatttctaagagctgtaaaagctcgaata |
894 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1361691 |
gatcacaactcgaataagctttgttgagatcaaaaccagctattccacctgattcatttctaagagctgtaaaagctcgaata |
1361609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 680; E-Value: 0
Query Start/End: Original strand, 39 - 894
Target Start/End: Complemental strand, 1355578 - 1354723
Alignment:
| Q |
39 |
gtctacctagttgttggaattggaaggattcctatacttgtaaagagcagcaatgagatcatcaatatattgattatgaatatcttttgaactgaaaacg |
138 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1355578 |
gtctacttagttgttggaattggaaggaaccctatacttgtaaagagcagcaataaagtcatcaatatattgattgtgaatatcttttgaactgaaaacc |
1355479 |
T |
|
| Q |
139 |
ttccccaactctttagcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccat |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1355478 |
ttccccaactctttagcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccat |
1355379 |
T |
|
| Q |
239 |
cttcctcactccttggtacctcaacagccactcccttttccaccaatgcccttgaaaacaaacattggtcaagcaaataaggcagtgtcacaagaacatg |
338 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1355378 |
cttcctcactccttggtacttcaacagccacttccttttccaccaatgcccttgaaaacaaacactggtcaagcaaataaggcagtgtcacaagaacatg |
1355279 |
T |
|
| Q |
339 |
gccgaaatgaaccttctcaataacagaaccagaaccacagtgactcatacatccaccaattgctccatgagctaagattttaagctgaggtgcccatgtc |
438 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1355278 |
gccaaaatgaaccttttcaataacagaaccagaaccacaatgactcatacatccaccaattgctccatgagctaagatcttaagctgaggtgcccatgtc |
1355179 |
T |
|
| Q |
439 |
ttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctttcagattcttcaaagcccaaaagaaagacaacc |
538 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1355178 |
ttccaaacaattccgcgttctttcgtcctttcctcgaatccttcaggtaattcaagtgtaccctctttcagattcttcaaagtccaaaagaaagacaacc |
1355079 |
T |
|
| Q |
539 |
cagaaagctcaattccatgagccaactcagttaaatcattctgactcaacttcaactcactcccaaatccaatgtaaacaacagaagatgattctcttga |
638 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1355078 |
cagaaagctcaattccataagccaactcagttaaatcttcctgactcaacttcaactcactcccaaatccaatgtaaacaacagaagatgattctcttga |
1354979 |
T |
|
| Q |
639 |
atccaaccaccctttgattttcacccaatcaggattgttcgcttcctcttcatcgtctcttatctgcatagatggtggaagcaacccaacaggaacgaca |
738 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| ||||||||||||||| ||| |
|
|
| T |
1354978 |
atccaaccaccctttgattttcacccaatcaggattgttctcttcctcttcatcatctcttatctgcatagaaggtggaatcaacccaacaggaacaaca |
1354879 |
T |
|
| Q |
739 |
ggaaccttgtattgttcagagatataatccaaccattcaccttcaagttctcttgaggttctgagaagaaaaagatcacaactcgaataagctttgttga |
838 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||| ||||||| |
|
|
| T |
1354878 |
ggaacattgtactgttcagagatataatccaaccattcaccttcaagctctctcgaggttctgagaagtaaaagatcacaacttgaataagcattgttga |
1354779 |
T |
|
| Q |
839 |
gatcaaaaccagctattccacctgattcatttctaagagctgtaaaagctcgaata |
894 |
Q |
| |
|
|| || || ||| || ||||||||||| |||||||||||| ||||||| |||| |
|
|
| T |
1354778 |
gaccagaatcaggcatgttacctgattcatctctaagagctgtgaaagctctaata |
1354723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 282; E-Value: 1e-157
Query Start/End: Original strand, 170 - 835
Target Start/End: Complemental strand, 20493118 - 20492453
Alignment:
| Q |
170 |
tacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaacagccac |
269 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| | || | ||||||||||||||| |||||||||| |||| ||||||||||||||| ||||| |
|
|
| T |
20493118 |
tacttccttcctcatccactattgccaacctcaatgttttggctatagagtccctagtaaaggacccatcttgctcattccttggtacctcaatagccaa |
20493019 |
T |
|
| Q |
270 |
tcccttttccaccaatgcccttgaaaacaaacattggtcaagcaaataaggcagtgtcacaagaacatggccgaaatgaaccttctcaataacagaacca |
369 |
Q |
| |
|
| | |||| | | | | ||||||||||||||||| |||| |||||||||| ||||||||| ||||| || ||||||| ||||||||| || ||||| |
|
|
| T |
20493018 |
tttcctttcttctagttctcttgaaaacaaacattgatcaattaaataaggcaatgtcacaagtacatgcccaaaatgaagcttctcaatgactgaacct |
20492919 |
T |
|
| Q |
370 |
gaaccacagtgactcatacatccaccaattgctccatgagctaagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttcttt |
469 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||||||| || ||||| ||||||||||| |||||||| ||||| |||||| ||||||| |
|
|
| T |
20492918 |
gaaccacaatgactcatacatccaccaattgatccatgagctaagatctttagctgtggtgcccatgttttccaaacgattccatattcttttgttcttt |
20492819 |
T |
|
| Q |
470 |
cctcaaatccttcaggtaattcaagtgtaccctctttcagattcttcaaagcccaaaagaaagacaacccagaaagctcaattccatgagccaactcagt |
569 |
Q |
| |
|
| ||||||||||| ||||||||||||||||| ||||| || || ||||||||||||||||||| |||| ||| |||||||||||||||| |||||||| |
|
|
| T |
20492818 |
cttcaaatccttcgggtaattcaagtgtaccttctttaaggtttttcaaagcccaaaagaaaggtaacctagattgctcaattccatgagctaactcagt |
20492719 |
T |
|
| Q |
570 |
taaatcattctgactcaacttcaactcactcccaaatccaatgtaaacaacagaagatgattctcttgaatccaaccaccctttgattttcacccaatca |
669 |
Q |
| |
|
|| ||| | ||| | ||||| ||||| ||||| ||||||||||||||||| |||||||||||| ||||||||||||| | |||||||||||||||||| |
|
|
| T |
20492718 |
tagatcttgttgatttaactttaactcgctcccgaatccaatgtaaacaaccgaagatgattcttttgaatccaaccaagccttgattttcacccaatca |
20492619 |
T |
|
| Q |
670 |
ggattgttcgcttcctcttcatcgtctcttatctgcatagatggtggaagcaacccaacaggaacgacaggaaccttgtattgttcagagatataatcca |
769 |
Q |
| |
|
|| | ||| |||| || |||| ||||||||||||||| ||||||||||| | ||||| ||||| ||||||||||||||| | || || |||||||| | |
|
|
| T |
20492618 |
gggtcgttttcttcttcctcattgtctcttatctgcatggatggtggaagtattccaactggaaccacaggaaccttgtatcgatccgaaatataatcta |
20492519 |
T |
|
| Q |
770 |
accattcaccttcaagttctcttgaggttctgagaagaaaaagatcacaactcgaataagctttgt |
835 |
Q |
| |
|
|||||| ||||||||||||||| | || ||||| ||||| ||| ||||||||||| ||| |||||| |
|
|
| T |
20492518 |
accattgaccttcaagttctctagtggctctgataagaataaggtcacaactcgagtaaactttgt |
20492453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 70 - 821
Target Start/End: Complemental strand, 29955083 - 29954332
Alignment:
| Q |
70 |
ctatacttgtaaagagcagcaatgagatcatcaatatattgattatgaatatcttttgaactgaaaacgttccccaactctttagcattgttcctgaaac |
169 |
Q |
| |
|
|||||||| | |||||||||||||| ||| | ||| |||| ||| |||| |||||||||||||||||| || ||| ||||| ||||| |||| || || |
|
|
| T |
29955083 |
ctatacttttgaagagcagcaatgacatctttaatgtattcattgtgaagatcttttgaactgaaaaccttttccatatctttggcattattcc-gatac |
29954985 |
T |
|
| Q |
170 |
-tacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaacagcca |
268 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| || || | |||||||||||||| |||||||||| |||||||||||||||||||| |||| |
|
|
| T |
29954984 |
atacttccttcctcatccactattgccaacctcaatgtttgggctatcgagtccctagtaaaggacccatcttgctcactccttggtacctcaattgcca |
29954885 |
T |
|
| Q |
269 |
ctcccttttccaccaatgcccttgaaaacaaacattggtcaagcaaataaggcagtgtcacaagaacatggccgaaatgaaccttctcaataacagaacc |
368 |
Q |
| |
|
| |||||| | | ||| ||||||||||||||||||||| | |||||||||| ||||||||| ||||| || ||||||| ||||||||| || ||||| |
|
|
| T |
29954884 |
ccttcttttcttctagtgctcttgaaaacaaacattggtcaggtaaataaggcaatgtcacaaggacatgcccaaaatgaagcttctcaatgactgaacc |
29954785 |
T |
|
| Q |
369 |
agaaccacagtgactcatacatccaccaattgctccatgagctaagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctt |
468 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||| |||||||| ||||| | |||||| |||||| |
|
|
| T |
29954784 |
tgaaccacaatgactcatacatccaccaattgatccatgagctaagatcttaagttgaggtgcccatgttttccaaacgattccacattcttttgttctt |
29954685 |
T |
|
| Q |
469 |
tcctcaaatccttcaggtaattcaagtgtaccctctttcagattcttcaaagcccaaaagaaagacaacccagaaagctcaattccatgagccaactcag |
568 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||| |||||||||||||||||| || ||||||| |
|
|
| T |
29954684 |
tcctcaaatcctttaggtaattcaagtgtaccctctttaagatttttcaaagcccaaaagaaaggcaacctagaaagctcaattccatgcgctaactcag |
29954585 |
T |
|
| Q |
569 |
ttaaatcattctgactcaacttcaactcactcccaaatccaatgtaaacaacagaagatgattctcttgaatccaaccaccctttgattttcacccaatc |
668 |
Q |
| |
|
||| ||| | || || ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||| |
|
|
| T |
29954584 |
ttagatcttgttggcttaacttcaactcgctcccaaatccaatgtaaacaacagaagatgattcttttgaatccaaccatgccttgattttcacccaact |
29954485 |
T |
|
| Q |
669 |
aggattgttcgcttcctcttcatcgtctcttatctgcatagatggtggaagcaacccaacaggaacgacaggaaccttgtattgttcagagatataatcc |
768 |
Q |
| |
|
||| ||| | |||||||||| ||||||||||||||||| ||||||||||||| ||||| ||||| |||||||| |||||||| | ||| |||||||| |
|
|
| T |
29954484 |
agggttgctttcttcctcttcgtcgtctcttatctgcatggatggtggaagcattccaactggaaccacaggaactttgtattggtaagaaatataatct |
29954385 |
T |
|
| Q |
769 |
aaccattcaccttcaagttctcttgaggttctgagaagaaaaagatcacaact |
821 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | ||||||||| |||||||| |
|
|
| T |
29954384 |
aaccattcaccttcaagttctctagaggttcttataagaaaaaggtcacaact |
29954332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 81 - 809
Target Start/End: Original strand, 51369381 - 51370109
Alignment:
| Q |
81 |
aagagcagcaatgagatcatcaatatattgattatgaatatcttttgaactgaaaacgttccccaactctttagcattgttcctgaaactacttccttcc |
180 |
Q |
| |
|
||||||||| || | ||| | ||| |||||||| |||| ||||||||||||||||| || |||| ||||||||||| |||||| | | || |||||| |
|
|
| T |
51369381 |
aagagcagcgattaaatctttaatgtattgattgtgaagatcttttgaactgaaaatttttcccatatctttagcatttttcctgcacgtgctaccttcc |
51369480 |
T |
|
| Q |
181 |
tcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaacagccactcccttttcca |
280 |
Q |
| |
|
|||||||| ||| |||||||||||| | || ||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||| |||||| |
|
|
| T |
51369481 |
tcatccactattaccaacctcaatgttttggctacagagtccctagtaaaggacccatcttgctcactccttggtacttcaacagccactttcttttctt |
51369580 |
T |
|
| Q |
281 |
ccaatgcccttgaaaacaaacattggtcaagcaaataaggcagtgtcacaagaacatggccgaaatgaaccttctcaataacagaaccagaaccacagtg |
380 |
Q |
| |
|
| | | |||| | ||||||| |||||||| | |||||||| ||| ||||||||||| || | ||||| | |||||| || |||| ||||||||| |
|
|
| T |
51369581 |
ctagtaatcttgcatacaaacactggtcaagtatataaggcaatgtgacaagaacatgcccaagatgaagcatctcaacgactgaacttccaccacagtg |
51369680 |
T |
|
| Q |
381 |
actcatacatccaccaattgctccatgagctaagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatcct |
480 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||| | ||| ||| |||| || |||||||||||||| |||||||| ||||||||||| |||||| |
|
|
| T |
51369681 |
actcatacatccaccaattgatggatgagctaagattttgatctggggtacccaggttttccaaacaattccacgttcttttgttctttcctcgaatcct |
51369780 |
T |
|
| Q |
481 |
tcaggtaattcaagtgtaccctctttcagattcttcaaagcccaaaagaaagacaacccagaaagctcaattccatgagccaactcagttaaatcattct |
580 |
Q |
| |
|
| |||||||||| | ||| ||||| ||| ||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||| | | |
|
|
| T |
51369781 |
tgaggtaattcagatacaccgtctttacgatctttcaaagcccaaaagaaaggtaacccagaaagttcaattccatgagctaactcagttaaatcttgtt |
51369880 |
T |
|
| Q |
581 |
gactcaacttcaactcactcccaaatccaatgtaaacaacagaagatgattctcttgaatccaaccaccctttgattttcacccaatcaggattgttcgc |
680 |
Q |
| |
|
|| ||||| |||| || ||||||||||||||||||||||||||||||||| |||| |||||||| | ||||| | ||||||||||| ||||| | |
|
|
| T |
51369881 |
gatctaactttgactcgcttccaaatccaatgtaaacaacagaagatgattcttttgagtccaaccatgccttgatgtggacccaatcagggttgttttc |
51369980 |
T |
|
| Q |
681 |
ttcctcttcatcgtctcttatctgcatagatggtggaagcaacccaacaggaacgacaggaaccttgtattgttcagagatataatccaaccattcacct |
780 |
Q |
| |
|
|| | || ||||||||||| |||| ||||||||||| | |||||||||| ||||||||||||||| | | ||| | |||||| |||||| |||| |
|
|
| T |
51369981 |
atcatgttggtcgtctcttatatgcaaggatggtggaagaactccaacaggaagcacaggaaccttgtatcggtgagaaagataatctaaccatggacct |
51370080 |
T |
|
| Q |
781 |
tcaagttctcttgaggttctgagaagaaa |
809 |
Q |
| |
|
||||||||||| |||||||| | |||||| |
|
|
| T |
51370081 |
tcaagttctctagaggttctaataagaaa |
51370109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 69 - 838
Target Start/End: Complemental strand, 12847062 - 12846293
Alignment:
| Q |
69 |
cctatacttgtaaagagcagcaatgagatcatcaatatattgattatgaatatcttttgaactgaaaacgttccccaactctttagcattgttcctgaaa |
168 |
Q |
| |
|
||||||||| | |||||||||||||| ||| ||||| |||| || |||| |||||||||||||||| || |||| |||||| |||||||||||| || |
|
|
| T |
12847062 |
cctatacttttgaagagcagcaatgaaatcttcaatgtattttttgtgaagttcttttgaactgaaaatcttgcccatctcttttgcattgttcctgtaa |
12846963 |
T |
|
| Q |
169 |
ctacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaacagcca |
268 |
Q |
| |
|
|| ||||||| |||||| ||||| |||||||||| | || ||| ||||||||||||| |||||||| |||||||| ||||| ||||||| |||| |
|
|
| T |
12846962 |
ataattccttcggcatccattattgctaacctcaatgttagggctacaaagtccctagtaaaggacccatcctcctcacttcttggaacctcaatggcca |
12846863 |
T |
|
| Q |
269 |
ctcccttttccaccaatgcccttgaaaacaaacattggtcaagcaaataaggcagtgtcacaagaacatggccgaaatgaaccttctcaataacagaacc |
368 |
Q |
| |
|
|| |||||| | | | | ||||||||||||||||| || ||||||||||||| ||| ||||||||||| || ||||| | ||||||||| || ||||| |
|
|
| T |
12846862 |
ctttcttttcagctagttctcttgaaaacaaacattgatctagcaaataaggcaatgtaacaagaacatgtccaaaatggagcttctcaatgactgaacc |
12846763 |
T |
|
| Q |
369 |
agaaccacagtgactcatacatccaccaattgctccatgagctaagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctt |
468 |
Q |
| |
|
|||||||| ||||||||||| || |||||||||||||| | |||||| |||||||| ||||||||||| |||||||||||||| |||||||| |||| |
|
|
| T |
12846762 |
tgaaccacaatgactcatacaccccccaattgctccatgggataagatcttaagctggggtgcccatgttttccaaacaattccacgttctttggttcga |
12846663 |
T |
|
| Q |
469 |
tcctcaaatccttcaggtaattcaagtgtaccctctttcagattcttcaaagcccaaaagaaagacaacccagaaagctcaattccatgagccaactcag |
568 |
Q |
| |
|
|| || ||||||| |||||| ||||||||||||| ||| || || ||||||||||||||||||| |||| ||||||||||||||||||||| || || | |
|
|
| T |
12846662 |
tcttcgaatcctttaggtaactcaagtgtacccttttttaggtttttcaaagcccaaaagaaaggtaacctagaaagctcaattccatgagctaattcgg |
12846563 |
T |
|
| Q |
569 |
ttaaatcattctgactcaacttcaactcactcccaaatccaatgtaaacaacagaagatgattctcttgaatccaaccaccctttgattttcacccaatc |
668 |
Q |
| |
|
||| ||| || || | ||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| ||| ||||||| |||||| |
|
|
| T |
12846562 |
ttagatctttttgcgttaacctcaactcgctcccaaatccaatgtaaacaacggaagatgattctcttgaatccagccatttttttattttcaaccaatc |
12846463 |
T |
|
| Q |
669 |
aggattgttcgcttcctcttcatcgtctcttatctgcatagatggtggaagcaacccaacaggaacgacaggaaccttgtattgttcagagatataatcc |
768 |
Q |
| |
|
||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12846462 |
aggatggttctcttcctcctcatcgtctcttatctgcatagatggtggaagcaacccaacaagaacgacaggagccttgtattgttcagagatataatcc |
12846363 |
T |
|
| Q |
769 |
aaccattcaccttcaagttctcttgaggttctgagaagaaaaagatcacaactcgaataagctttgttga |
838 |
Q |
| |
|
|||||||||| |||||| |||||||| |||||||| ||| ||| |||||||| ||||| ||||||||| |
|
|
| T |
12846362 |
aaccattcactttcaagctctcttgatgttctgagtagatgaaggtcacaacttgaatatactttgttga |
12846293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 106 - 812
Target Start/End: Complemental strand, 14623128 - 14622422
Alignment:
| Q |
106 |
tattgattatgaatatcttttgaactgaaaacgttccccaactctttagcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatg |
205 |
Q |
| |
|
|||| ||| |||| |||||||||||| | ||| || |||| ||||| |||||||||||| || ||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
14623128 |
tattcattgtgaagatcttttgaactcacaacctttcccatgtctttggcattgttcctgtaaatacttccttcctcatccactattaccaacctcaatg |
14623029 |
T |
|
| Q |
206 |
agtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaacagccactcccttttccaccaatgcccttgaaaacaaacattg |
305 |
Q |
| |
|
| ||| ||| |||||||| ||| | ||||||| |||||||||||||||||||||||||||| |||||| | | | | |||| |||||||||||| |
|
|
| T |
14623028 |
ttttagcaacacagtccctattaatggccccatctggctcactccttggtacctcaacagccactttcttttcttctagtactcttgcaaacaaacattg |
14622929 |
T |
|
| Q |
306 |
gtcaagcaaataaggcagtgtcacaagaacatggccgaaatgaaccttctcaataacagaaccagaaccacagtgactcatacatccaccaattgctcca |
405 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| || | ||||| | | ||||| || |||| | |||||| ||| ||||||| |||| ||||| | || |
|
|
| T |
14622928 |
gtcaagtaaataaggcaatgtcacaagaacatgcccaagatgaagcatttcaatgactgaactgggaccacaatgagtcatacaaccactaattgattca |
14622829 |
T |
|
| Q |
406 |
tgagctaagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctt |
505 |
Q |
| |
|
|||| |||||| |||| ||| |||||||| || ||||||||||||||||||||||| ||||||||||| || |||| ||| ||||||||| |||||||| |
|
|
| T |
14622828 |
tgagttaagatcttaaactggggtgcccaagttttccaaacaattccgcgttcttttgttctttcctcgaaccctttaggcaattcaagtacaccctctt |
14622729 |
T |
|
| Q |
506 |
tcagattcttcaaagcccaaaagaaagacaacccagaaagctcaattccatgagccaactcagttaaatcattctgactcaacttcaactcactcccaaa |
605 |
Q |
| |
|
| |||| || |||||||||||||| | |||| ||||||||||||||||||||| |||||||||| ||| | ||||| |||||| |||| |||||||| |
|
|
| T |
14622728 |
taagatcttttaaagcccaaaagaacggtaacctagaaagctcaattccatgagctaactcagttatatcttgttgacttaacttcgactcgctcccaaa |
14622629 |
T |
|
| Q |
606 |
tccaatgtaaacaacagaagatgattctcttgaatccaaccaccctttgattttcacccaatcaggattgttcgcttcctcttcatcgtctcttatctgc |
705 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||| | |||||||||||||| |||||||| || | || ||||| || |||||||||||| |
|
|
| T |
14622628 |
tccaatgtaaacaatagaagatgattcttttgaatccaaccatgccttgattttcacccagtcaggattcttttcatcttcttcgtcatctcttatctgc |
14622529 |
T |
|
| Q |
706 |
atagatggtggaagcaacccaacaggaacgacaggaaccttgtattgttcagagatataatccaaccattcaccttcaagttctcttgaggttctgagaa |
805 |
Q |
| |
|
|||| |||||||||||| || || ||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||||| || |
|
|
| T |
14622528 |
ataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggttctgaaaa |
14622429 |
T |
|
| Q |
806 |
gaaaaag |
812 |
Q |
| |
|
||||||| |
|
|
| T |
14622428 |
gaaaaag |
14622422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 106 - 812
Target Start/End: Complemental strand, 14589470 - 14588764
Alignment:
| Q |
106 |
tattgattatgaatatcttttgaactgaaaacgttccccaactctttagcattgttcctgaaactacttccttcctcatccacaattgccaacctcaatg |
205 |
Q |
| |
|
|||| ||| |||| |||||||||||| | ||| || |||| ||||| |||||||||||| || ||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
14589470 |
tattcattgtgaagatcttttgaactcacaacctttcccatttctttggcattgttcctgtaaatacttccttcctcatccactattaccaacctcaatg |
14589371 |
T |
|
| Q |
206 |
agtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaacagccactcccttttccaccaatgcccttgaaaacaaacattg |
305 |
Q |
| |
|
| ||| ||| |||||||| ||| | ||||||| |||||||||||||||||||||||||||| |||||| | | | | |||| |||||||||||| |
|
|
| T |
14589370 |
ttttagcaacacagtccctattaatggccccatctggctcactccttggtacctcaacagccactttcttttcttctagtactcttgcaaacaaacattg |
14589271 |
T |
|
| Q |
306 |
gtcaagcaaataaggcagtgtcacaagaacatggccgaaatgaaccttctcaataacagaaccagaaccacagtgactcatacatccaccaattgctcca |
405 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| || | || || | | |||| || |||| | |||||| ||| ||||||| |||||||||| |||| |
|
|
| T |
14589270 |
gtcaagtaaataaggcaatgtcacaagaacatgcccaagataaagcatttcaaagactgaacttggaccacaatgagtcatacaaccaccaattgatcca |
14589171 |
T |
|
| Q |
406 |
tgagctaagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttctttcctcaaatccttcaggtaattcaagtgtaccctctt |
505 |
Q |
| |
|
|||| |||||| |||| ||| ||| |||| || ||||||||||||||||||||||| ||||||||||| || |||| ||| ||||||||| |||||||| |
|
|
| T |
14589170 |
tgagttaagatcttaaactggggtacccaagttttccaaacaattccgcgttcttttgttctttcctcgaaccctttaggcaattcaagtacaccctctt |
14589071 |
T |
|
| Q |
506 |
tcagattcttcaaagcccaaaagaaagacaacccagaaagctcaattccatgagccaactcagttaaatcattctgactcaacttcaactcactcccaaa |
605 |
Q |
| |
|
| |||| || |||||||||||||| | |||| ||||||||||||||||||||| |||||||||| ||| | ||||| |||||| |||| |||||||| |
|
|
| T |
14589070 |
taagatcttttaaagcccaaaagaacggtaacctagaaagctcaattccatgagctaactcagttatatcttgttgacttaacttcgactcgctcccaaa |
14588971 |
T |
|
| Q |
606 |
tccaatgtaaacaacagaagatgattctcttgaatccaaccaccctttgattttcacccaatcaggattgttcgcttcctcttcatcgtctcttatctgc |
705 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||| | |||||||||||||| |||||||| || | || ||||| || |||||||||||| |
|
|
| T |
14588970 |
tccaatgtaaacaatagaagatgattcttttgaatccaaccatgccttgattttcacccattcaggattcttttcatcttcttcgtcatctcttatctgc |
14588871 |
T |
|
| Q |
706 |
atagatggtggaagcaacccaacaggaacgacaggaaccttgtattgttcagagatataatccaaccattcaccttcaagttctcttgaggttctgagaa |
805 |
Q |
| |
|
|||| |||||||||||| || || ||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||| |||||||||| || |
|
|
| T |
14588870 |
ataggtggtggaagcaatccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggttctgaaaa |
14588771 |
T |
|
| Q |
806 |
gaaaaag |
812 |
Q |
| |
|
||||||| |
|
|
| T |
14588770 |
gaaaaag |
14588764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 314; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-176
Query Start/End: Original strand, 70 - 811
Target Start/End: Complemental strand, 11532396 - 11531656
Alignment:
| Q |
70 |
ctatacttgtaaagagcagcaatgagatcatcaatatattgattatgaatatcttttgaactgaaaacgttccccaactctttagcattgttcctgaaac |
169 |
Q |
| |
|
|||||||| | ||||||| |||| | ||| ||||| |||||||| |||| |||||||||||||||||| || |||| ||||| |||||||| ||| | |
|
|
| T |
11532396 |
ctatacttttgaagagcaacaataaaatcttcaatgtattgattgtgaagatcttttgaactgaaaacctttcccatatctttggcattgtttctgtacg |
11532297 |
T |
|
| Q |
170 |
tacttccttcctcatccacaattgccaacctcaatgagtgagccacagagtccctagtaaaagacccatcttcctcactccttggtacctcaacagccac |
269 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||| | || || |||||||||||||| ||||| |||| |||||||||||||||||||| |||||| |
|
|
| T |
11532296 |
tacttccttcctcatccattattaccaacctcaatgttttggctactgagtccctagtaaaggacccgtctttctcactccttggtacctcaatagccac |
11532197 |
T |
|
| Q |
270 |
tcccttttccaccaatgcccttgaaaacaaacattggtcaagcaaataaggcagtgtcacaagaacatggccgaaatgaaccttctcaataacagaacca |
369 |
Q |
| |
|
| |||||| | | | | ||||| |||||||||||||||| |||||||||| |||||||||| |||| || ||||||| ||||||||| || ||||| |
|
|
| T |
11532196 |
tttcttttcttctagtactcttgagaacaaacattggtcaattaaataaggcaatgtcacaagagcatgcccaaaatgaagcttctcaatgactgaacct |
11532097 |
T |
|
| Q |
370 |
gaaccacagtgactcatacatccaccaattgctccatgagctaagattttaagctgaggtgcccatgtcttccaaacaattccgcgttctttcgttcttt |
469 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||| |||||||| ||||| || ||||||||||| |||||||||||||| |||||||| ||||||| |
|
|
| T |
11532096 |
gaaccacagtgactcatacatccaccgattgatccatgtgctaagatcttaagttgtggtgcccatgttttccaaacaattccacgttcttttgttcttt |
11531997 |
T |
|
| Q |
470 |
cctcaaatccttcaggtaattcaagtgtaccctctttcagattcttcaaagcccaaaagaaagacaacccagaaagctcaattccatgagccaactcagt |
569 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| |||||| | |
|
|
| T |
11531996 |
cctcaaattctttaggtaattcaagtgtaccctctttaagatttttcaaagcccaaaagaaaggcaacctagaaagctcaattccatgagctaactcaat |
11531897 |
T |
|
| Q |
570 |
taaatcattctgactcaacttcaactcactcccaaatccaatgtaaacaacagaagatgattctcttgaatccaaccaccctttgattttcacccaatca |
669 |
Q |
| |
|
|| ||| | ||||| | ||| ||| ||||||||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||| ||||||| |
|
|
| T |
11531896 |
tagatcttgttgacttattttcgtctcgctcccaaatccaatgtaaacaacagaagacgattcttttgaatccaaccatgccttgattttcatccaatca |
11531797 |
T |
|
| Q |
670 |
ggattgttcgcttcctcttcatcgtctcttatctgcatagatggtggaagcaacccaacaggaacgacaggaaccttgtattgttcagagatataatcca |
769 |
Q |
| |
|
| ||||| |||||| ||| || |||||||||||||| |||||||||||||| ||||| ||||| ||| ||||||| ||||| ||| |||||||| | |
|
|
| T |
11531796 |
aggttgttttcttcct-ttcgtcttctcttatctgcatggatggtggaagcaatccaactggaaccacacgaaccttatattggctagaaatataatcta |
11531698 |
T |
|
| Q |
770 |
accattcaccttcaagttctcttgaggttctgagaagaaaaa |
811 |
Q |
| |
|
|||||||||||||||||||| | || |||||| |||||||| |
|
|
| T |
11531697 |
accattcaccttcaagttctttacagcttctgataagaaaaa |
11531656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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